Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC25.21■■□□□ 1.63
RTF1Q92541 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC25.21■■□□□ 1.63
RTF1Q92541 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
RTF1Q92541 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
RTF1Q92541 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC25.21■■□□□ 1.63
RTF1Q92541 AC104417.2-201ENST00000562989 1793 ntBASIC25.21■■□□□ 1.63
RTF1Q92541 ZNF815P-204ENST00000434898 1737 ntBASIC25.2■■□□□ 1.63
RTF1Q92541 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
RTF1Q92541 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
RTF1Q92541 TERF1P1-201ENST00000311003 1181 ntBASIC25.2■■□□□ 1.62
RTF1Q92541 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
RTF1Q92541 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC25.2■■□□□ 1.62
RTF1Q92541 INGX-201ENST00000359239 846 ntBASIC25.2■■□□□ 1.62
RTF1Q92541 CCR12P-201ENST00000446203 998 ntBASIC25.2■■□□□ 1.62
RTF1Q92541 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC25.2■■□□□ 1.62
RTF1Q92541 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC25.2■■□□□ 1.62
RTF1Q92541 AC116562.4-202ENST00000641738 218 ntBASIC25.2■■□□□ 1.62
RTF1Q92541 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
RTF1Q92541 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC25.2■■□□□ 1.62
RTF1Q92541 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC25.2■■□□□ 1.62
RTF1Q92541 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC25.2■■□□□ 1.62
RTF1Q92541 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC25.19■■□□□ 1.62
RTF1Q92541 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC25.19■■□□□ 1.62
RTF1Q92541 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC25.19■■□□□ 1.62
RTF1Q92541 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 SLC25A1P2-201ENST00000430693 912 ntBASIC25.19■■□□□ 1.62
RTF1Q92541 KRT18P57-201ENST00000443599 1254 ntBASIC25.19■■□□□ 1.62
RTF1Q92541 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 CKBP1-201ENST00000565489 1086 ntBASIC25.19■■□□□ 1.62
RTF1Q92541 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC25.19■■□□□ 1.62
RTF1Q92541 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC25.19■■□□□ 1.62
RTF1Q92541 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC25.19■■□□□ 1.62
RTF1Q92541 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
RTF1Q92541 PCDHAC2-203ENST00000615316 3011 ntBASIC25.19■■□□□ 1.62
RTF1Q92541 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC25.19■■□□□ 1.62
RTF1Q92541 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC25.19■■□□□ 1.62
RTF1Q92541 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
RTF1Q92541 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC25.18■■□□□ 1.62
RTF1Q92541 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC25.18■■□□□ 1.62
RTF1Q92541 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
RTF1Q92541 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC25.18■■□□□ 1.62
RTF1Q92541 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
RTF1Q92541 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
RTF1Q92541 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
RTF1Q92541 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
RTF1Q92541 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
RTF1Q92541 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
RTF1Q92541 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
RTF1Q92541 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
RTF1Q92541 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC25.17■■□□□ 1.62
RTF1Q92541 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
RTF1Q92541 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
RTF1Q92541 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
RTF1Q92541 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
RTF1Q92541 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
RTF1Q92541 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
RTF1Q92541 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC25.17■■□□□ 1.62
RTF1Q92541 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
RTF1Q92541 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
RTF1Q92541 LIN28AP1-201ENST00000429574 405 ntBASIC25.17■■□□□ 1.62
RTF1Q92541 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC25.17■■□□□ 1.62
RTF1Q92541 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC25.17■■□□□ 1.62
RTF1Q92541 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
RTF1Q92541 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
RTF1Q92541 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
RTF1Q92541 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
RTF1Q92541 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
RTF1Q92541 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
RTF1Q92541 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
RTF1Q92541 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
RTF1Q92541 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC25.16■■□□□ 1.62
RTF1Q92541 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
RTF1Q92541 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
RTF1Q92541 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC25.16■■□□□ 1.62
RTF1Q92541 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
RTF1Q92541 FAM87A-204ENST00000613235 858 ntBASIC25.16■■□□□ 1.62
RTF1Q92541 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC25.16■■□□□ 1.62
RTF1Q92541 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC25.16■■□□□ 1.62
RTF1Q92541 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC25.16■■□□□ 1.62
RTF1Q92541 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
RTF1Q92541 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC25.16■■□□□ 1.62
RTF1Q92541 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
RTF1Q92541 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
RTF1Q92541 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
RTF1Q92541 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC25.15■■□□□ 1.62
RTF1Q92541 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
RTF1Q92541 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
RTF1Q92541 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms