Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 AC005332.1-201ENST00000577698 1310 ntBASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 HOMER2P1-201ENST00000455653 964 ntBASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 SNX5-210ENST00000481323 562 ntTSL 3 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 DBP-204ENST00000599385 709 ntTSL 3 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 GABARAPL3-202ENST00000624044 1851 ntBASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 TOLLIP-AS1-201ENST00000530897 939 ntBASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
USHBP1Q8N6Y0 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 AL512604.3-201ENST00000569583 964 ntBASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 AC008622.2-201ENST00000617006 1229 ntBASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 AL031432.5-201ENST00000641059 760 ntBASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 AC112907.3-201ENST00000577781 2400 ntBASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
USHBP1Q8N6Y0 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
USHBP1Q8N6Y0 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
USHBP1Q8N6Y0 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.67
USHBP1Q8N6Y0 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
USHBP1Q8N6Y0 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC25.45■■□□□ 1.66
USHBP1Q8N6Y0 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
USHBP1Q8N6Y0 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC25.45■■□□□ 1.66
USHBP1Q8N6Y0 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC25.45■■□□□ 1.66
USHBP1Q8N6Y0 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC25.45■■□□□ 1.66
USHBP1Q8N6Y0 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC25.45■■□□□ 1.66
USHBP1Q8N6Y0 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
USHBP1Q8N6Y0 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
USHBP1Q8N6Y0 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
USHBP1Q8N6Y0 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.66
USHBP1Q8N6Y0 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
USHBP1Q8N6Y0 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 GCSHP2-201ENST00000560971 527 ntBASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 AC083849.1-201ENST00000615227 514 ntBASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 AC104417.2-201ENST00000562989 1793 ntBASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC25.44■■□□□ 1.66
USHBP1Q8N6Y0 AL157384.1-201ENST00000445995 2473 ntBASIC25.43■■□□□ 1.66
USHBP1Q8N6Y0 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
USHBP1Q8N6Y0 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC25.43■■□□□ 1.66
USHBP1Q8N6Y0 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC25.43■■□□□ 1.66
USHBP1Q8N6Y0 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC25.43■■□□□ 1.66
USHBP1Q8N6Y0 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC25.43■■□□□ 1.66
USHBP1Q8N6Y0 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC25.43■■□□□ 1.66
USHBP1Q8N6Y0 AC112907.2-201ENST00000448639 330 ntBASIC25.43■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms