Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 TSSC2-201ENST00000450217 709 ntBASIC24.37■■□□□ 1.49
RC3H1Q5TC82 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 AC016734.2-201ENST00000624325 1377 ntBASIC24.37■■□□□ 1.49
RC3H1Q5TC82 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
RC3H1Q5TC82 AC133561.1-201ENST00000568600 2415 ntBASIC24.36■■□□□ 1.49
RC3H1Q5TC82 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 AC011498.5-201ENST00000592027 486 ntBASIC24.36■■□□□ 1.49
RC3H1Q5TC82 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
RC3H1Q5TC82 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 AC020907.5-201ENST00000624372 1936 ntBASIC24.35■■□□□ 1.49
RC3H1Q5TC82 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
RC3H1Q5TC82 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 PRELID1P1-202ENST00000567272 903 ntBASIC24.34■■□□□ 1.49
RC3H1Q5TC82 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 AL121672.3-201ENST00000608644 468 ntBASIC24.34■■□□□ 1.49
RC3H1Q5TC82 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC24.34■■□□□ 1.49
RC3H1Q5TC82 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RC3H1Q5TC82 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
RC3H1Q5TC82 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC24.33■■□□□ 1.49
RC3H1Q5TC82 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC24.33■■□□□ 1.49
RC3H1Q5TC82 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RC3H1Q5TC82 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RC3H1Q5TC82 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
RC3H1Q5TC82 AP002383.4-201ENST00000442518 975 ntBASIC24.33■■□□□ 1.49
RC3H1Q5TC82 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC24.33■■□□□ 1.49
RC3H1Q5TC82 KRT17P6-201ENST00000453795 1220 ntBASIC24.33■■□□□ 1.49
RC3H1Q5TC82 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
RC3H1Q5TC82 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC24.33■■□□□ 1.49
RC3H1Q5TC82 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
RC3H1Q5TC82 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC24.33■■□□□ 1.49
RC3H1Q5TC82 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RC3H1Q5TC82 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
RC3H1Q5TC82 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.48
RC3H1Q5TC82 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.48
RC3H1Q5TC82 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RC3H1Q5TC82 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC24.32■■□□□ 1.48
RC3H1Q5TC82 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC24.32■■□□□ 1.48
RC3H1Q5TC82 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RC3H1Q5TC82 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RC3H1Q5TC82 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms