Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 TREX1-205ENST00000625293 1783 ntBASIC15.55■□□□□ 0.08
CX3CL1P78423 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC15.55■□□□□ 0.08
CX3CL1P78423 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC15.55■□□□□ 0.08
CX3CL1P78423 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC15.55■□□□□ 0.08
CX3CL1P78423 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC15.55■□□□□ 0.08
CX3CL1P78423 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC15.55■□□□□ 0.08
CX3CL1P78423 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 AC006058.3-201ENST00000606217 1069 ntBASIC15.55■□□□□ 0.08
CX3CL1P78423 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC15.55■□□□□ 0.08
CX3CL1P78423 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CX3CL1P78423 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC15.54■□□□□ 0.08
CX3CL1P78423 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CX3CL1P78423 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 PWWP2AP1-201ENST00000429776 2273 ntBASIC15.54■□□□□ 0.08
CX3CL1P78423 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC15.54■□□□□ 0.08
CX3CL1P78423 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC15.54■□□□□ 0.08
CX3CL1P78423 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC15.54■□□□□ 0.08
CX3CL1P78423 AC233263.1-201ENST00000578059 224 ntBASIC15.54■□□□□ 0.08
CX3CL1P78423 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC15.54■□□□□ 0.08
CX3CL1P78423 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC15.54■□□□□ 0.08
CX3CL1P78423 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CX3CL1P78423 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
CX3CL1P78423 GOLGA6L3-201ENST00000507199 1679 ntBASIC15.54■□□□□ 0.08
CX3CL1P78423 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CX3CL1P78423 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC15.53■□□□□ 0.08
CX3CL1P78423 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CX3CL1P78423 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CX3CL1P78423 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CX3CL1P78423 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CX3CL1P78423 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CX3CL1P78423 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CX3CL1P78423 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CX3CL1P78423 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CX3CL1P78423 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
CX3CL1P78423 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CX3CL1P78423 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC15.53■□□□□ 0.08
CX3CL1P78423 YBX1P10-201ENST00000444752 975 ntBASIC15.53■□□□□ 0.08
CX3CL1P78423 FAM201B-201ENST00000458407 597 ntBASIC15.53■□□□□ 0.08
CX3CL1P78423 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC15.53■□□□□ 0.08
CX3CL1P78423 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC15.53■□□□□ 0.08
CX3CL1P78423 MTDHP1-201ENST00000605323 784 ntBASIC15.53■□□□□ 0.08
CX3CL1P78423 AC073648.6-201ENST00000641589 218 ntBASIC15.53■□□□□ 0.08
CX3CL1P78423 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CX3CL1P78423 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC15.53■□□□□ 0.08
CX3CL1P78423 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CX3CL1P78423 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CX3CL1P78423 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC15.53■□□□□ 0.08
CX3CL1P78423 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CX3CL1P78423 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CX3CL1P78423 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CX3CL1P78423 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CX3CL1P78423 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
CX3CL1P78423 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CX3CL1P78423 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CX3CL1P78423 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CX3CL1P78423 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC15.52■□□□□ 0.08
CX3CL1P78423 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CX3CL1P78423 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CX3CL1P78423 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CX3CL1P78423 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CX3CL1P78423 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CX3CL1P78423 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CX3CL1P78423 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC15.52■□□□□ 0.08
CX3CL1P78423 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CX3CL1P78423 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
CX3CL1P78423 TSPY20P-201ENST00000450910 630 ntBASIC15.52■□□□□ 0.08
CX3CL1P78423 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC15.52■□□□□ 0.08
CX3CL1P78423 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC15.52■□□□□ 0.08
CX3CL1P78423 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CX3CL1P78423 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC15.52■□□□□ 0.08
CX3CL1P78423 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms