Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 AL121829.2-201ENST00000620908 328 ntBASIC18.12■□□□□ 0.49
RFX3P48380 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.12■□□□□ 0.49
RFX3P48380 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
RFX3P48380 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
RFX3P48380 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.12■□□□□ 0.49
RFX3P48380 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RFX3P48380 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.12■□□□□ 0.49
RFX3P48380 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.11■□□□□ 0.49
RFX3P48380 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.11■□□□□ 0.49
RFX3P48380 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.11■□□□□ 0.49
RFX3P48380 TSPY20P-201ENST00000450910 630 ntBASIC18.11■□□□□ 0.49
RFX3P48380 FAM201B-201ENST00000458407 597 ntBASIC18.11■□□□□ 0.49
RFX3P48380 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.11■□□□□ 0.49
RFX3P48380 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.11■□□□□ 0.49
RFX3P48380 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.11■□□□□ 0.49
RFX3P48380 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.11■□□□□ 0.49
RFX3P48380 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.11■□□□□ 0.49
RFX3P48380 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.11■□□□□ 0.49
RFX3P48380 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFX3P48380 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.11■□□□□ 0.49
RFX3P48380 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.11■□□□□ 0.49
RFX3P48380 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
RFX3P48380 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX3P48380 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
RFX3P48380 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX3P48380 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.1■□□□□ 0.49
RFX3P48380 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RFX3P48380 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
RFX3P48380 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.1■□□□□ 0.49
RFX3P48380 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.1■□□□□ 0.49
RFX3P48380 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
RFX3P48380 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.1■□□□□ 0.49
RFX3P48380 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX3P48380 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
RFX3P48380 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX3P48380 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.1■□□□□ 0.49
RFX3P48380 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX3P48380 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.1■□□□□ 0.49
RFX3P48380 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.1■□□□□ 0.49
RFX3P48380 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.1■□□□□ 0.49
RFX3P48380 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.1■□□□□ 0.49
RFX3P48380 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.1■□□□□ 0.49
RFX3P48380 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RFX3P48380 AL023875.1-201ENST00000640777 796 ntBASIC18.1■□□□□ 0.49
RFX3P48380 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.1■□□□□ 0.49
RFX3P48380 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RFX3P48380 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
RFX3P48380 PKD1P1-201ENST00000458669 6805 ntBASIC18.1■□□□□ 0.49
RFX3P48380 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RFX3P48380 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RFX3P48380 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RFX3P48380 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX3P48380 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFX3P48380 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX3P48380 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RFX3P48380 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RFX3P48380 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
RFX3P48380 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX3P48380 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX3P48380 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RFX3P48380 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
RFX3P48380 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.09■□□□□ 0.49
RFX3P48380 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RFX3P48380 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX3P48380 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
RFX3P48380 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX3P48380 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX3P48380 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
RFX3P48380 POU5F1P3-201ENST00000428824 1078 ntBASIC18.09■□□□□ 0.49
RFX3P48380 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.09■□□□□ 0.49
RFX3P48380 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.09■□□□□ 0.49
RFX3P48380 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
RFX3P48380 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.09■□□□□ 0.49
RFX3P48380 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.09■□□□□ 0.49
RFX3P48380 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms