Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.58
HNF4AP41235 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HNF4AP41235 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
HNF4AP41235 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HNF4AP41235 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HNF4AP41235 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HNF4AP41235 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.7■□□□□ 0.58
HNF4AP41235 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.7■□□□□ 0.58
HNF4AP41235 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.7■□□□□ 0.58
HNF4AP41235 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.7■□□□□ 0.58
HNF4AP41235 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HNF4AP41235 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.7■□□□□ 0.58
HNF4AP41235 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
HNF4AP41235 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.7■□□□□ 0.58
HNF4AP41235 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.7■□□□□ 0.58
HNF4AP41235 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.7■□□□□ 0.58
HNF4AP41235 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HNF4AP41235 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HNF4AP41235 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HNF4AP41235 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.7■□□□□ 0.58
HNF4AP41235 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
HNF4AP41235 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.7■□□□□ 0.58
HNF4AP41235 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HNF4AP41235 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
HNF4AP41235 AC018445.3-201ENST00000624177 1945 ntBASIC18.7■□□□□ 0.58
HNF4AP41235 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HNF4AP41235 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HNF4AP41235 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HNF4AP41235 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HNF4AP41235 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
HNF4AP41235 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HNF4AP41235 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.69■□□□□ 0.58
HNF4AP41235 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HNF4AP41235 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HNF4AP41235 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.69■□□□□ 0.58
HNF4AP41235 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.69■□□□□ 0.58
HNF4AP41235 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HNF4AP41235 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
HNF4AP41235 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.69■□□□□ 0.58
HNF4AP41235 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.69■□□□□ 0.58
HNF4AP41235 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HNF4AP41235 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HNF4AP41235 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.69■□□□□ 0.58
HNF4AP41235 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.69■□□□□ 0.58
HNF4AP41235 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HNF4AP41235 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
HNF4AP41235 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HNF4AP41235 NBPF21P-201ENST00000425093 1451 ntBASIC18.69■□□□□ 0.58
HNF4AP41235 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HNF4AP41235 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HNF4AP41235 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.69■□□□□ 0.58
HNF4AP41235 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HNF4AP41235 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
HNF4AP41235 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
HNF4AP41235 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HNF4AP41235 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
HNF4AP41235 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HNF4AP41235 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HNF4AP41235 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
HNF4AP41235 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.68■□□□□ 0.58
HNF4AP41235 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
HNF4AP41235 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HNF4AP41235 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HNF4AP41235 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HNF4AP41235 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HNF4AP41235 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
HNF4AP41235 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.68■□□□□ 0.58
HNF4AP41235 PRORSD1P-201ENST00000295112 541 ntBASIC18.68■□□□□ 0.58
HNF4AP41235 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
HNF4AP41235 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HNF4AP41235 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HNF4AP41235 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HNF4AP41235 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.68■□□□□ 0.58
HNF4AP41235 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.68■□□□□ 0.58
HNF4AP41235 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HNF4AP41235 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.68■□□□□ 0.58
HNF4AP41235 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
HNF4AP41235 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.68■□□□□ 0.58
HNF4AP41235 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
HNF4AP41235 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HNF4AP41235 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.67■□□□□ 0.58
HNF4AP41235 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.67■□□□□ 0.58
HNF4AP41235 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HNF4AP41235 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
HNF4AP41235 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.67■□□□□ 0.58
HNF4AP41235 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HNF4AP41235 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HNF4AP41235 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
HNF4AP41235 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
HNF4AP41235 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HNF4AP41235 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.67■□□□□ 0.58
HNF4AP41235 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
HNF4AP41235 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.67■□□□□ 0.58
HNF4AP41235 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
HNF4AP41235 AC104417.2-201ENST00000562989 1793 ntBASIC18.67■□□□□ 0.58
HNF4AP41235 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HNF4AP41235 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HNF4AP41235 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.67■□□□□ 0.58
HNF4AP41235 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HNF4AP41235 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms