Protein–RNA interactions for Protein: P07339

CTSD, Cathepsin D, humanhuman

Predicted RBP Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTSDP07339 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.03■□□□□ 0.16
CTSDP07339 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.03■□□□□ 0.16
CTSDP07339 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CTSDP07339 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.03■□□□□ 0.16
CTSDP07339 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.03■□□□□ 0.16
CTSDP07339 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CTSDP07339 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CTSDP07339 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
CTSDP07339 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CTSDP07339 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
CTSDP07339 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CTSDP07339 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CTSDP07339 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CTSDP07339 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC16.03■□□□□ 0.16
CTSDP07339 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CTSDP07339 KRT18P61-201ENST00000585825 1298 ntBASIC16.03■□□□□ 0.16
CTSDP07339 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC16.03■□□□□ 0.16
CTSDP07339 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CTSDP07339 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CTSDP07339 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CTSDP07339 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.03■□□□□ 0.16
CTSDP07339 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CTSDP07339 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
CTSDP07339 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
CTSDP07339 IRX1P1-201ENST00000438849 1838 ntBASIC16.03■□□□□ 0.16
CTSDP07339 AC018470.1-201ENST00000624790 3129 ntBASIC16.03■□□□□ 0.16
CTSDP07339 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
CTSDP07339 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CTSDP07339 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CTSDP07339 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.03■□□□□ 0.16
CTSDP07339 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.02■□□□□ 0.16
CTSDP07339 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CTSDP07339 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CTSDP07339 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CTSDP07339 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CTSDP07339 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CTSDP07339 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CTSDP07339 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CTSDP07339 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CTSDP07339 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.02■□□□□ 0.16
CTSDP07339 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CTSDP07339 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.02■□□□□ 0.16
CTSDP07339 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CTSDP07339 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC16.02■□□□□ 0.16
CTSDP07339 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CTSDP07339 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CTSDP07339 CYP2T3P-201ENST00000601990 817 ntBASIC16.02■□□□□ 0.16
CTSDP07339 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CTSDP07339 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC16.02■□□□□ 0.15
CTSDP07339 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.02■□□□□ 0.15
CTSDP07339 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
CTSDP07339 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
CTSDP07339 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CTSDP07339 NOC2LP1-202ENST00000452600 2235 ntBASIC16.02■□□□□ 0.15
CTSDP07339 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CTSDP07339 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
CTSDP07339 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CTSDP07339 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CTSDP07339 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CTSDP07339 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CTSDP07339 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CTSDP07339 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CTSDP07339 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CTSDP07339 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.01■□□□□ 0.15
CTSDP07339 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CTSDP07339 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CTSDP07339 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC16.01■□□□□ 0.15
CTSDP07339 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC16.01■□□□□ 0.15
CTSDP07339 C2orf69P4-201ENST00000565394 541 ntBASIC16.01■□□□□ 0.15
CTSDP07339 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.01■□□□□ 0.15
CTSDP07339 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC16.01■□□□□ 0.15
CTSDP07339 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC16.01■□□□□ 0.15
CTSDP07339 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CTSDP07339 NOC2LP2-201ENST00000407594 1944 ntBASIC16.01■□□□□ 0.15
CTSDP07339 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.01■□□□□ 0.15
CTSDP07339 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CTSDP07339 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CTSDP07339 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CTSDP07339 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CTSDP07339 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.01■□□□□ 0.15
CTSDP07339 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC16.01■□□□□ 0.15
CTSDP07339 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.01■□□□□ 0.15
CTSDP07339 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC16.01■□□□□ 0.15
CTSDP07339 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CTSDP07339 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16■□□□□ 0.15
CTSDP07339 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC16■□□□□ 0.15
CTSDP07339 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16■□□□□ 0.15
CTSDP07339 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CTSDP07339 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16■□□□□ 0.15
CTSDP07339 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CTSDP07339 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16■□□□□ 0.15
CTSDP07339 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CTSDP07339 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CTSDP07339 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16■□□□□ 0.15
CTSDP07339 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16■□□□□ 0.15
CTSDP07339 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16■□□□□ 0.15
CTSDP07339 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CTSDP07339 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CTSDP07339 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CTSDP07339 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms