Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC16.41■□□□□ 0.22
SDCBPO00560 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC16.41■□□□□ 0.22
SDCBPO00560 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC16.41■□□□□ 0.22
SDCBPO00560 AC083906.2-201ENST00000511578 360 ntBASIC16.41■□□□□ 0.22
SDCBPO00560 AC023632.3-201ENST00000521633 145 ntBASIC16.41■□□□□ 0.22
SDCBPO00560 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC16.41■□□□□ 0.22
SDCBPO00560 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SDCBPO00560 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC16.41■□□□□ 0.22
SDCBPO00560 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.41■□□□□ 0.22
SDCBPO00560 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SDCBPO00560 AL049812.1-201ENST00000432563 2267 ntBASIC16.41■□□□□ 0.22
SDCBPO00560 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
SDCBPO00560 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.41■□□□□ 0.22
SDCBPO00560 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
SDCBPO00560 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 AL161938.1-201ENST00000569833 2180 ntBASIC16.41■□□□□ 0.22
SDCBPO00560 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC16.41■□□□□ 0.22
SDCBPO00560 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC16.41■□□□□ 0.22
SDCBPO00560 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.41■□□□□ 0.22
SDCBPO00560 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SDCBPO00560 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.41■□□□□ 0.22
SDCBPO00560 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SDCBPO00560 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SDCBPO00560 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC16.4■□□□□ 0.22
SDCBPO00560 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SDCBPO00560 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 SLC29A4P1-201ENST00000398760 971 ntBASIC16.4■□□□□ 0.22
SDCBPO00560 METTL15-202ENST00000403099 795 ntTSL 5 BASIC16.4■□□□□ 0.22
SDCBPO00560 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC16.4■□□□□ 0.22
SDCBPO00560 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC16.4■□□□□ 0.22
SDCBPO00560 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC16.4■□□□□ 0.22
SDCBPO00560 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC16.4■□□□□ 0.22
SDCBPO00560 MARS-234ENST00000630571 216 ntTSL 5 BASIC16.4■□□□□ 0.22
SDCBPO00560 MARS-235ENST00000630803 183 ntTSL 3 BASIC16.4■□□□□ 0.22
SDCBPO00560 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.4■□□□□ 0.22
SDCBPO00560 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SDCBPO00560 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SDCBPO00560 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.22
SDCBPO00560 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
SDCBPO00560 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.39■□□□□ 0.21
SDCBPO00560 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC16.39■□□□□ 0.21
SDCBPO00560 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC16.39■□□□□ 0.21
SDCBPO00560 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC16.39■□□□□ 0.21
SDCBPO00560 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.39■□□□□ 0.21
SDCBPO00560 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SDCBPO00560 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.39■□□□□ 0.21
SDCBPO00560 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SDCBPO00560 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.39■□□□□ 0.21
SDCBPO00560 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 AC005082.1-201ENST00000413042 2259 ntBASIC16.39■□□□□ 0.21
SDCBPO00560 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SDCBPO00560 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
SDCBPO00560 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDCBPO00560 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDCBPO00560 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SDCBPO00560 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SDCBPO00560 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDCBPO00560 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SDCBPO00560 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.38■□□□□ 0.21
SDCBPO00560 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDCBPO00560 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDCBPO00560 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDCBPO00560 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms