Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 TSPY14P-201ENST00000303979 915 ntBASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 AL049597.2-201ENST00000565575 961 ntBASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
TRAV40A0A0B4J280 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 USP39-204ENST00000409766 2033 ntTSL 2 BASIC15.72■□□□□ 0.11
TRAV40A0A0B4J280 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC15.71■□□□□ 0.11
TRAV40A0A0B4J280 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
TRAV40A0A0B4J280 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC15.71■□□□□ 0.1
TRAV40A0A0B4J280 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRAV40A0A0B4J280 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRAV40A0A0B4J280 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
TRAV40A0A0B4J280 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRAV40A0A0B4J280 AC112907.3-201ENST00000577781 2400 ntBASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 TCF3P1-201ENST00000423021 1937 ntBASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 CCR12P-201ENST00000446203 998 ntBASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 AC010203.1-204ENST00000548782 407 ntBASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms