Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 PCAT14-202ENST00000627127 3935 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AL672167.1-204ENST00000641875 3017 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 METTL21EP-201ENST00000298105 713 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 RN7SKP292-201ENST00000365522 317 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 RNU6-729P-201ENST00000384399 107 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 RNA5SP122-201ENST00000384457 108 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 SDHDP6-201ENST00000414693 480 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 RPL26P29-201ENST00000415623 438 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 BMS1P17-202ENST00000416720 316 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 EIF4A1P7-201ENST00000421800 1220 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 HMGB3P10-201ENST00000434734 572 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AC002504.1-201ENST00000438281 691 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 SUMO2P3-201ENST00000438311 288 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 CYCSP24-201ENST00000445119 316 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 RPS3AP14-201ENST00000483907 780 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 KLRA1P-201ENST00000503499 986 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 SAP18P1-201ENST00000512058 390 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 TBCA-207ENST00000520039 157 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AC109635.6-201ENST00000525487 1113 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AC020661.2-201ENST00000560114 134 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AC010547.6-201ENST00000571789 193 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AP005403.1-201ENST00000579720 229 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AC006272.2-201ENST00000594725 163 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 HCG18-243ENST00000602498 327 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 XIST-210ENST00000602863 775 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 MTCO2P22-201ENST00000603246 681 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AL133255.1-201ENST00000606374 441 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AL355802.3-201ENST00000607571 545 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AL139089.1-201ENST00000620372 975 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AP003400.3-201ENST00000624904 346 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AC073869.8-201ENST00000641806 335 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 AC109315.1-201ENST00000584143 1347 ntBASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC39Q9UFE4 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 STX3-208ENST00000641815 3236 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 UBBP2-201ENST00000376781 231 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 Y_RNA.431-201ENST00000384086 102 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 RPL23AP19-201ENST00000436229 369 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 HMGB1P16-201ENST00000447155 540 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AL035407.2-201ENST00000454090 378 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 ARPC3P2-201ENST00000457786 533 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 ACTG1P13-201ENST00000486987 1043 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AC138866.2-201ENST00000508650 584 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 MTCO1P30-201ENST00000515244 580 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 PAICSP4-201ENST00000517543 1253 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AC008802.1-201ENST00000519121 791 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 CA1-215ENST00000522389 551 ntTSL 3 BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms