Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 EPS15P1-201ENST00000448836 336 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AC010733.1-201ENST00000451515 401 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 TRGVB-201ENST00000453257 471 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 HMGN3P1-201ENST00000453847 193 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 RN7SL346P-201ENST00000491561 294 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AC016559.2-201ENST00000510759 359 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 ENPP7P9-201ENST00000514456 627 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 RNA5SP392-201ENST00000516905 112 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 SOD1P3-201ENST00000518682 454 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 DEFB131D-201ENST00000526803 184 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AC027369.5-201ENST00000533838 755 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AC090181.2-201ENST00000602975 672 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AC007497.1-201ENST00000610421 561 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 STX3-208ENST00000641815 3236 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.09□□□□□ -1.6
TDP1Q9NUW8 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
TDP1Q9NUW8 MTND5P29-201ENST00000458676 1807 ntBASIC5.09□□□□□ -1.6
TDP1Q9NUW8 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 OR4A15-201ENST00000314706 1035 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AL663109.1-201ENST00000411498 844 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 RPL6P29-201ENST00000414863 865 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 TBCAP2-201ENST00000416175 326 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AL953862.1-201ENST00000423016 168 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 RPS3AP44-201ENST00000425466 790 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 BMS1P19-201ENST00000433925 393 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC005154.2-201ENST00000438110 379 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AL512286.1-201ENST00000439244 400 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AL691482.1-201ENST00000453255 87 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC010326.1-201ENST00000462726 602 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AL117351.2-201ENST00000513571 157 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC087276.1-201ENST00000529659 480 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 CYCSP2-201ENST00000558168 301 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC074051.3-201ENST00000570238 358 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 MTCYBP13-201ENST00000578634 1093 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 ZNF415P1-201ENST00000582279 1166 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC018695.5-201ENST00000605872 315 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC087752.4-201ENST00000605911 462 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC092354.2-201ENST00000607786 514 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 AC010678.1-201ENST00000614118 713 ntBASIC5.08□□□□□ -1.6
TDP1Q9NUW8 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TDP1Q9NUW8 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
TDP1Q9NUW8 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
TDP1Q9NUW8 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
TDP1Q9NUW8 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
TDP1Q9NUW8 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 395.4 ms