Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC092111.1-201ENST00000618256 3358 ntBASIC10.58□□□□□ -0.72
MSH5O43196 AC010886.1-201ENST00000437380 2869 ntBASIC10.58□□□□□ -0.72
MSH5O43196 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
MSH5O43196 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
MSH5O43196 RNA5SP361-201ENST00000362686 118 ntBASIC10.58□□□□□ -0.72
MSH5O43196 Y_RNA.393-201ENST00000383936 102 ntBASIC10.58□□□□□ -0.72
MSH5O43196 MIR320B1-201ENST00000390209 79 ntBASIC10.58□□□□□ -0.72
MSH5O43196 LAP3P1-201ENST00000403648 294 ntBASIC10.58□□□□□ -0.72
MSH5O43196 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC10.58□□□□□ -0.72
MSH5O43196 RPS26P40-201ENST00000435209 294 ntBASIC10.58□□□□□ -0.72
MSH5O43196 PPIAP3-201ENST00000450588 505 ntBASIC10.58□□□□□ -0.72
MSH5O43196 AC004692.1-201ENST00000455430 424 ntBASIC10.58□□□□□ -0.72
MSH5O43196 RNU1-88P-201ENST00000459274 128 ntBASIC10.58□□□□□ -0.72
MSH5O43196 RPL34P34-201ENST00000465389 354 ntBASIC10.58□□□□□ -0.72
MSH5O43196 RN7SL585P-201ENST00000470538 280 ntBASIC10.58□□□□□ -0.72
MSH5O43196 AC018630.3-201ENST00000542637 96 ntBASIC10.58□□□□□ -0.72
MSH5O43196 KCTD2-206ENST00000581589 993 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
MSH5O43196 AC090241.1-201ENST00000587732 621 ntBASIC10.58□□□□□ -0.72
MSH5O43196 MALAT1.1-201ENST00000618249 95 ntBASIC10.58□□□□□ -0.72
MSH5O43196 AC026950.2-201ENST00000633456 470 ntTSL 3 BASIC10.58□□□□□ -0.72
MSH5O43196 FRMPD2-201ENST00000305531 4665 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
MSH5O43196 ANAPC5-204ENST00000441917 2147 ntTSL 5 BASIC10.58□□□□□ -0.72
MSH5O43196 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC10.58□□□□□ -0.72
MSH5O43196 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
MSH5O43196 KNG1-201ENST00000265023 3435 ntAPPRIS ALT1 TSL 2 BASIC10.58□□□□□ -0.72
MSH5O43196 VWA5A-205ENST00000456829 4388 ntAPPRIS P4 TSL 1 (best) BASIC10.58□□□□□ -0.72
MSH5O43196 ZADH2-202ENST00000537114 3205 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
MSH5O43196 PSMC1P7-201ENST00000495689 1315 ntBASIC10.58□□□□□ -0.72
MSH5O43196 PICALM-201ENST00000356360 1958 ntTSL 5 BASIC10.57□□□□□ -0.72
MSH5O43196 AC116351.1-201ENST00000399869 3482 ntTSL 2 BASIC10.57□□□□□ -0.72
MSH5O43196 USP37-204ENST00000418019 3353 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
MSH5O43196 ERCC6-201ENST00000355832 8008 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
MSH5O43196 MMGT1-201ENST00000305963 3738 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
MSH5O43196 LINC01091-204ENST00000515769 2204 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
MSH5O43196 STAMBP-201ENST00000339566 6277 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
MSH5O43196 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
MSH5O43196 AL590004.4-201ENST00000566733 7060 ntBASIC10.57□□□□□ -0.72
MSH5O43196 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
MSH5O43196 AC007685.1-201ENST00000329806 452 ntBASIC10.57□□□□□ -0.72
MSH5O43196 MIR185-201ENST00000385288 82 ntBASIC10.57□□□□□ -0.72
MSH5O43196 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC10.57□□□□□ -0.72
MSH5O43196 AL049758.1-201ENST00000423154 397 ntBASIC10.57□□□□□ -0.72
MSH5O43196 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC10.57□□□□□ -0.72
MSH5O43196 RPS27P1-201ENST00000450552 247 ntBASIC10.57□□□□□ -0.72
MSH5O43196 AL590369.1-201ENST00000455074 470 ntTSL 2 BASIC10.57□□□□□ -0.72
MSH5O43196 AL109809.3-201ENST00000456875 246 ntBASIC10.57□□□□□ -0.72
MSH5O43196 AC005726.1-201ENST00000494679 427 ntBASIC10.57□□□□□ -0.72
MSH5O43196 ZBED3-AS1-203ENST00000504506 702 ntTSL 3 BASIC10.57□□□□□ -0.72
MSH5O43196 AC093870.1-201ENST00000506837 213 ntBASIC10.57□□□□□ -0.72
MSH5O43196 AC092336.1-201ENST00000510562 415 ntTSL 3 BASIC10.57□□□□□ -0.72
MSH5O43196 RNU6-781P-201ENST00000516377 101 ntBASIC10.57□□□□□ -0.72
MSH5O43196 AL450226.2-201ENST00000622913 439 ntBASIC10.57□□□□□ -0.72
MSH5O43196 NUP214-208ENST00000483497 3275 ntTSL 2 BASIC10.57□□□□□ -0.72
MSH5O43196 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
MSH5O43196 TRIM66-201ENST00000299550 9753 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
MSH5O43196 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC10.57□□□□□ -0.72
MSH5O43196 AP003972.1-201ENST00000625192 5446 ntBASIC10.57□□□□□ -0.72
MSH5O43196 AC139256.1-201ENST00000569858 2598 ntTSL 2 BASIC10.57□□□□□ -0.72
MSH5O43196 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC10.57□□□□□ -0.72
MSH5O43196 ARHGAP24-202ENST00000395183 2740 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
MSH5O43196 FAM205BP-202ENST00000399773 4009 ntBASIC10.56□□□□□ -0.72
MSH5O43196 ZNF174-203ENST00000571936 1586 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
MSH5O43196 LRRC37A4P-201ENST00000579913 3243 ntTSL 2 BASIC10.56□□□□□ -0.72
MSH5O43196 MEF2C-221ENST00000514015 2772 ntTSL 5 BASIC10.56□□□□□ -0.72
MSH5O43196 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC10.56□□□□□ -0.72
MSH5O43196 LAX1-202ENST00000367217 1356 ntAPPRIS ALT2 TSL 2 BASIC10.56□□□□□ -0.72
MSH5O43196 NAIP-204ENST00000503719 5347 ntTSL 5 BASIC10.56□□□□□ -0.72
MSH5O43196 PARP2-204ENST00000527915 1980 ntTSL 2 BASIC10.56□□□□□ -0.72
MSH5O43196 AL139811.2-201ENST00000373465 1630 ntBASIC10.56□□□□□ -0.72
MSH5O43196 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
MSH5O43196 LPAR1-205ENST00000541779 2490 ntAPPRIS ALT1 TSL 1 (best) BASIC10.56□□□□□ -0.72
MSH5O43196 CALML4-203ENST00000395465 4155 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
MSH5O43196 RNU6-961P-201ENST00000363893 105 ntBASIC10.56□□□□□ -0.72
MSH5O43196 SPRR1A-201ENST00000368762 270 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
MSH5O43196 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
MSH5O43196 PROX1-AS1-201ENST00000413560 496 ntTSL 5 BASIC10.56□□□□□ -0.72
MSH5O43196 AP001043.1-203ENST00000415824 407 ntTSL 5 BASIC10.56□□□□□ -0.72
MSH5O43196 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
MSH5O43196 AC006028.1-201ENST00000438379 402 ntBASIC10.56□□□□□ -0.72
MSH5O43196 HIST1H2APS6-201ENST00000448609 364 ntBASIC10.56□□□□□ -0.72
MSH5O43196 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC10.56□□□□□ -0.72
MSH5O43196 RNU7-27P-201ENST00000459281 62 ntBASIC10.56□□□□□ -0.72
MSH5O43196 AC135721.1-201ENST00000497954 479 ntBASIC10.56□□□□□ -0.72
MSH5O43196 IGKV2D-38-201ENST00000518423 240 ntBASIC10.56□□□□□ -0.72
MSH5O43196 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC10.56□□□□□ -0.72
MSH5O43196 AL020996.2-202ENST00000527604 334 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
MSH5O43196 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC10.56□□□□□ -0.72
MSH5O43196 AC087393.3-201ENST00000584971 166 ntBASIC10.56□□□□□ -0.72
MSH5O43196 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC10.56□□□□□ -0.72
MSH5O43196 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC10.56□□□□□ -0.72
MSH5O43196 MIR6883-201ENST00000614952 78 ntBASIC10.56□□□□□ -0.72
MSH5O43196 RNF214-204ENST00000530849 2846 ntTSL 5 BASIC10.56□□□□□ -0.72
MSH5O43196 RBM46-201ENST00000281722 2583 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
MSH5O43196 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
MSH5O43196 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
MSH5O43196 WDR44-202ENST00000371822 3877 ntTSL 2 BASIC10.56□□□□□ -0.72
MSH5O43196 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC10.56□□□□□ -0.72
MSH5O43196 PTPN3-204ENST00000446349 8630 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
MSH5O43196 NFRKB-203ENST00000524794 4351 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
MSH5O43196 NNT-AS1-204ENST00000513560 4769 ntTSL 2 BASIC10.55□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms