Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC018754.1-201ENST00000607486 925 ntBASIC3.9□□□□□ -1.79
CCDC28BQ9BUN5 AL355816.2-201ENST00000610049 647 ntBASIC3.9□□□□□ -1.79
CCDC28BQ9BUN5 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC28BQ9BUN5 AC124312.6-202ENST00000623624 418 ntBASIC3.9□□□□□ -1.79
CCDC28BQ9BUN5 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
CCDC28BQ9BUN5 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC28BQ9BUN5 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC28BQ9BUN5 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC28BQ9BUN5 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 SNORA60-201ENST00000362396 134 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 RNU6-225P-201ENST00000384613 103 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 RNU6-328P-201ENST00000390887 106 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 MTCO3P31-201ENST00000405526 789 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 LSM5-205ENST00000409952 687 ntTSL 4 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 RNU6-584P-201ENST00000410350 95 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 TCEA1P2-201ENST00000420496 906 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 RPL23AP1-201ENST00000428990 471 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 USP9YP9-201ENST00000429406 715 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 PTMAP6-201ENST00000439110 327 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 HMGB1P37-201ENST00000439613 609 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AL353093.1-201ENST00000441292 436 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 GTF2IP12-201ENST00000456547 356 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 RNU7-27P-201ENST00000459281 62 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AC087385.1-201ENST00000475062 312 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 WDR78-207ENST00000488333 613 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 HMGB1P38-201ENST00000490557 577 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AC105233.1-201ENST00000498840 781 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AC026414.1-201ENST00000504046 698 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AC099522.1-202ENST00000514718 367 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 RNU6-347P-201ENST00000516658 105 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 IGKV2-23-201ENST00000518729 323 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AC025627.2-201ENST00000576220 160 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 RPL12P25-202ENST00000598100 674 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AP002906.1-201ENST00000603405 233 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AC099785.1-201ENST00000605697 437 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 AC034229.4-201ENST00000607861 441 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 FAM25E-202ENST00000608562 189 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 FRG1HP-204ENST00000617940 757 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 MIR7153-201ENST00000637758 57 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 ZNF849P-201ENST00000594711 1566 ntBASIC3.89□□□□□ -1.79
CCDC28BQ9BUN5 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 RNU5E-10P-201ENST00000363506 118 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 MIR184-201ENST00000384962 84 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 HLFP1-201ENST00000402375 499 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 VTA1P1-201ENST00000414044 866 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 TCEA1P4-201ENST00000415066 844 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 RPL31P12-201ENST00000422587 358 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 AL360081.1-201ENST00000428299 555 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 AL606517.1-201ENST00000446914 387 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 Z95152.1-201ENST00000453556 656 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 AC083982.1-201ENST00000485679 344 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 AC108729.1-201ENST00000487812 947 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 GTF2IP9-201ENST00000502460 301 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 IGBP1P5-201ENST00000507524 1000 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 AC110760.3-202ENST00000515177 371 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 OR5AK3P-201ENST00000527486 1297 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 AL121576.1-201ENST00000556055 276 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 RN7SL339P-201ENST00000580597 296 ntBASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28BQ9BUN5 MIR548Y-201ENST00000582739 110 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms