Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 MIR1178-201ENST00000408396 91 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 RNU6-130P-201ENST00000411112 103 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 Y_RNA.629-201ENST00000411368 105 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC6.38□□□□□ -1.39
FOXC1Q12948 AC114491.1-201ENST00000416095 246 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC6.38□□□□□ -1.39
FOXC1Q12948 AC091286.1-201ENST00000431233 461 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 RPL21P112-201ENST00000434403 463 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
FOXC1Q12948 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC6.38□□□□□ -1.39
FOXC1Q12948 PPIAP27-201ENST00000453800 265 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 HMGN3P1-201ENST00000453847 193 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
FOXC1Q12948 RPS26P39-201ENST00000469206 341 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 AC098847.1-201ENST00000473094 348 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC6.38□□□□□ -1.39
FOXC1Q12948 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC6.38□□□□□ -1.39
FOXC1Q12948 RPL19P11-201ENST00000495944 589 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC6.38□□□□□ -1.39
FOXC1Q12948 AC104806.1-201ENST00000508720 308 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 SSX6-203ENST00000509958 336 ntTSL 3 BASIC6.38□□□□□ -1.39
FOXC1Q12948 RNA5SP418-201ENST00000515951 117 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC6.38□□□□□ -1.39
FOXC1Q12948 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC6.38□□□□□ -1.39
FOXC1Q12948 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC6.38□□□□□ -1.39
FOXC1Q12948 AL049779.2-201ENST00000553847 315 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 HSPE1P2-201ENST00000554777 306 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 AC007225.2-201ENST00000562529 256 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 MRPS21P8-201ENST00000569196 235 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC6.38□□□□□ -1.39
FOXC1Q12948 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 MIR6719-201ENST00000622428 87 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 AP000843.1-201ENST00000624880 701 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC6.38□□□□□ -1.39
FOXC1Q12948 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
FOXC1Q12948 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.38□□□□□ -1.39
FOXC1Q12948 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC6.38□□□□□ -1.39
FOXC1Q12948 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC6.38□□□□□ -1.39
FOXC1Q12948 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
FOXC1Q12948 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
FOXC1Q12948 BBX-207ENST00000416476 2178 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
FOXC1Q12948 HDAC9-218ENST00000456174 2307 ntTSL 2 BASIC6.38□□□□□ -1.39
FOXC1Q12948 MELK-207ENST00000536860 2342 ntTSL 2 BASIC6.38□□□□□ -1.39
FOXC1Q12948 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
FOXC1Q12948 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
FOXC1Q12948 AL096816.1-201ENST00000623300 2920 ntBASIC6.38□□□□□ -1.39
FOXC1Q12948 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC6.38□□□□□ -1.39
FOXC1Q12948 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
FOXC1Q12948 MECOM-208ENST00000468789 3691 ntAPPRIS P3 TSL 2 BASIC6.38□□□□□ -1.39
FOXC1Q12948 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
FOXC1Q12948 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
FOXC1Q12948 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
FOXC1Q12948 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
FOXC1Q12948 POGZ-205ENST00000409503 4813 ntAPPRIS ALT1 TSL 2 BASIC6.37□□□□□ -1.39
FOXC1Q12948 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
FOXC1Q12948 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
FOXC1Q12948 LINC00559-201ENST00000569476 3867 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
FOXC1Q12948 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
FOXC1Q12948 AC108676.1-201ENST00000455557 2969 ntTSL 2 BASIC6.37□□□□□ -1.39
FOXC1Q12948 SYT1-212ENST00000552744 2718 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
FOXC1Q12948 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC6.37□□□□□ -1.39
FOXC1Q12948 KIF6-208ENST00000538893 2386 ntTSL 5 BASIC6.37□□□□□ -1.39
FOXC1Q12948 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
FOXC1Q12948 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
FOXC1Q12948 RPS17-209ENST00000561157 1909 ntTSL 2 BASIC6.37□□□□□ -1.39
FOXC1Q12948 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC6.37□□□□□ -1.39
FOXC1Q12948 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC6.37□□□□□ -1.39
FOXC1Q12948 AL049634.1-201ENST00000453770 1720 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC6.37□□□□□ -1.39
FOXC1Q12948 AC107884.1-207ENST00000504206 4433 ntTSL 3 BASIC6.37□□□□□ -1.39
FOXC1Q12948 GM2A-201ENST00000357164 3896 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
FOXC1Q12948 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC6.37□□□□□ -1.39
FOXC1Q12948 Y_RNA.8-201ENST00000362353 102 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 RNU6-28P-201ENST00000362378 107 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
FOXC1Q12948 MIR215-201ENST00000384858 110 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 MIR19A-201ENST00000384878 82 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 AL022100.1-202ENST00000421214 548 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 AC096920.1-201ENST00000423991 241 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 AC245014.1-201ENST00000427732 381 ntTSL 5 BASIC6.37□□□□□ -1.39
FOXC1Q12948 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.37□□□□□ -1.39
FOXC1Q12948 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
FOXC1Q12948 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.37□□□□□ -1.39
FOXC1Q12948 AL031659.1-201ENST00000447075 539 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 AC108059.3-201ENST00000456388 214 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 CYCSP34-201ENST00000458172 304 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 RNU7-27P-201ENST00000459281 62 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 RPL21P104-201ENST00000464143 478 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 AC117503.1-201ENST00000472241 394 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 RN7SL717P-201ENST00000478343 297 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 RPL12P30-201ENST00000488389 499 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC6.37□□□□□ -1.39
FOXC1Q12948 AC018645.1-201ENST00000505003 109 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 AKIRIN2P1-201ENST00000505898 352 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 AC027801.3-201ENST00000515049 698 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 RNA5SP287-201ENST00000516358 103 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 IGKV2-19-201ENST00000518132 283 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 AP006245.2-201ENST00000522004 300 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 MRPS36P4-201ENST00000534436 298 ntBASIC6.37□□□□□ -1.39
FOXC1Q12948 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms