Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 IGHV3-29-201ENST00000604817 344 ntBASIC4.33□□□□□ -1.72
COL18A1P39060 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
COL18A1P39060 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.33□□□□□ -1.72
COL18A1P39060 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL18A1P39060 AP000542.2-201ENST00000623199 6179 ntBASIC4.33□□□□□ -1.72
COL18A1P39060 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL18A1P39060 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL18A1P39060 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL18A1P39060 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL18A1P39060 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL18A1P39060 AC062016.1-201ENST00000355719 319 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
COL18A1P39060 NPM1P38-201ENST00000403835 865 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 AL138885.1-201ENST00000405921 675 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.32□□□□□ -1.72
COL18A1P39060 AC027309.2-201ENST00000520566 192 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC4.32□□□□□ -1.72
COL18A1P39060 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.32□□□□□ -1.72
COL18A1P39060 UBL5P2-201ENST00000583788 219 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.32□□□□□ -1.72
COL18A1P39060 AL356321.1-201ENST00000621360 228 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 AC016542.2-201ENST00000624201 619 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.32□□□□□ -1.72
COL18A1P39060 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL18A1P39060 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
COL18A1P39060 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL18A1P39060 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
COL18A1P39060 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL18A1P39060 AC027290.2-201ENST00000623210 18662 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC4.32□□□□□ -1.72
COL18A1P39060 AC002075.2-201ENST00000425207 252 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 YWHAEP5-201ENST00000431545 765 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.32□□□□□ -1.72
COL18A1P39060 AC099560.2-201ENST00000457554 255 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.32□□□□□ -1.72
COL18A1P39060 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.32□□□□□ -1.72
COL18A1P39060 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.32□□□□□ -1.72
COL18A1P39060 NDUFB9P3-201ENST00000521269 501 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 AL360157.1-201ENST00000565962 87 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.32□□□□□ -1.72
COL18A1P39060 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.32□□□□□ -1.72
COL18A1P39060 AL162574.2-201ENST00000614618 657 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 AC074276.2-201ENST00000619891 348 ntBASIC4.32□□□□□ -1.72
COL18A1P39060 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.32□□□□□ -1.72
COL18A1P39060 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL18A1P39060 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL18A1P39060 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL18A1P39060 RNA5SP235-201ENST00000365411 114 ntBASIC4.31□□□□□ -1.72
COL18A1P39060 NANOGP6-201ENST00000429190 847 ntBASIC4.31□□□□□ -1.72
COL18A1P39060 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.31□□□□□ -1.72
COL18A1P39060 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.31□□□□□ -1.72
COL18A1P39060 AC233982.1-201ENST00000451247 436 ntBASIC4.31□□□□□ -1.72
COL18A1P39060 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.31□□□□□ -1.72
COL18A1P39060 RPL23AP73-201ENST00000492507 471 ntBASIC4.31□□□□□ -1.72
COL18A1P39060 SCARNA20.6-201ENST00000517251 106 ntBASIC4.31□□□□□ -1.72
COL18A1P39060 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.31□□□□□ -1.72
COL18A1P39060 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC4.31□□□□□ -1.72
COL18A1P39060 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.31□□□□□ -1.72
COL18A1P39060 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL18A1P39060 XKRY2-202ENST00000623874 1581 ntBASIC4.31□□□□□ -1.72
COL18A1P39060 XKRY-202ENST00000624960 1581 ntBASIC4.31□□□□□ -1.72
COL18A1P39060 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL18A1P39060 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.3□□□□□ -1.72
COL18A1P39060 TRBV24OR9-2-201ENST00000416632 435 ntBASIC4.3□□□□□ -1.72
COL18A1P39060 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.3□□□□□ -1.72
COL18A1P39060 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.3□□□□□ -1.72
COL18A1P39060 AC026782.2-201ENST00000510845 636 ntBASIC4.3□□□□□ -1.72
COL18A1P39060 HNRNPKP5-201ENST00000515300 253 ntBASIC4.3□□□□□ -1.72
COL18A1P39060 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL18A1P39060 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC4.3□□□□□ -1.72
COL18A1P39060 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.3□□□□□ -1.72
COL18A1P39060 BNIP3P38-201ENST00000601117 544 ntBASIC4.3□□□□□ -1.72
COL18A1P39060 AC015813.4-201ENST00000610469 179 ntBASIC4.3□□□□□ -1.72
COL18A1P39060 MIR7106-201ENST00000612419 65 ntBASIC4.3□□□□□ -1.72
COL18A1P39060 MIR6715A-201ENST00000615929 79 ntBASIC4.3□□□□□ -1.72
COL18A1P39060 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC4.3□□□□□ -1.72
COL18A1P39060 AL356489.2-201ENST00000566968 3528 ntBASIC4.3□□□□□ -1.72
COL18A1P39060 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.3□□□□□ -1.72
COL18A1P39060 MTCO1P24-201ENST00000515438 1558 ntBASIC4.3□□□□□ -1.72
COL18A1P39060 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.3□□□□□ -1.72
COL18A1P39060 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL18A1P39060 AC073325.2-201ENST00000339545 159 ntBASIC4.3□□□□□ -1.72
COL18A1P39060 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.3□□□□□ -1.72
COL18A1P39060 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC4.3□□□□□ -1.72
COL18A1P39060 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC4.3□□□□□ -1.72
COL18A1P39060 FTLP19-201ENST00000433300 394 ntBASIC4.3□□□□□ -1.72
COL18A1P39060 RN7SL93P-201ENST00000463035 293 ntBASIC4.3□□□□□ -1.72
COL18A1P39060 AC010469.1-201ENST00000463864 576 ntBASIC4.3□□□□□ -1.72
COL18A1P39060 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.3□□□□□ -1.72
COL18A1P39060 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC4.3□□□□□ -1.72
COL18A1P39060 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC4.3□□□□□ -1.72
COL18A1P39060 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC4.3□□□□□ -1.72
COL18A1P39060 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL18A1P39060 AC087276.1-201ENST00000529659 480 ntBASIC4.3□□□□□ -1.72
COL18A1P39060 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC4.3□□□□□ -1.72
COL18A1P39060 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL18A1P39060 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL18A1P39060 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
COL18A1P39060 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms