Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.92□□□□□ -1.78
COL4A5P29400 AC140076.1-201ENST00000449897 361 ntBASIC3.92□□□□□ -1.78
COL4A5P29400 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A5P29400 S100A11P1-201ENST00000477525 312 ntBASIC3.92□□□□□ -1.78
COL4A5P29400 RPS3AP50-201ENST00000487064 803 ntBASIC3.92□□□□□ -1.78
COL4A5P29400 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.92□□□□□ -1.78
COL4A5P29400 RN7SKP132-201ENST00000516001 208 ntBASIC3.92□□□□□ -1.78
COL4A5P29400 AC087888.1-201ENST00000550884 1254 ntBASIC3.92□□□□□ -1.78
COL4A5P29400 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.92□□□□□ -1.78
COL4A5P29400 AL513302.2-201ENST00000562313 1842 ntBASIC3.92□□□□□ -1.78
COL4A5P29400 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A5P29400 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC3.92□□□□□ -1.78
COL4A5P29400 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A5P29400 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
COL4A5P29400 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A5P29400 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
COL4A5P29400 RNA5SP235-201ENST00000365411 114 ntBASIC3.91□□□□□ -1.78
COL4A5P29400 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.91□□□□□ -1.78
COL4A5P29400 HMGB3P9-201ENST00000441799 583 ntBASIC3.91□□□□□ -1.78
COL4A5P29400 SEPT14P1-201ENST00000458703 648 ntBASIC3.91□□□□□ -1.78
COL4A5P29400 RPS26P15-201ENST00000488067 348 ntBASIC3.91□□□□□ -1.78
COL4A5P29400 AC069499.1-201ENST00000489433 509 ntBASIC3.91□□□□□ -1.78
COL4A5P29400 VN1R104P-201ENST00000505115 1009 ntBASIC3.91□□□□□ -1.78
COL4A5P29400 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.91□□□□□ -1.78
COL4A5P29400 NDUFB9P3-201ENST00000521269 501 ntBASIC3.91□□□□□ -1.78
COL4A5P29400 GTF3AP2-201ENST00000557014 266 ntBASIC3.91□□□□□ -1.78
COL4A5P29400 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC3.91□□□□□ -1.78
COL4A5P29400 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC3.91□□□□□ -1.78
COL4A5P29400 AC068722.2-201ENST00000618734 544 ntBASIC3.91□□□□□ -1.78
COL4A5P29400 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC3.91□□□□□ -1.78
COL4A5P29400 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.91□□□□□ -1.78
COL4A5P29400 BTBD10P1-201ENST00000549824 1352 ntBASIC3.91□□□□□ -1.78
COL4A5P29400 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A5P29400 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC3.91□□□□□ -1.78
COL4A5P29400 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A5P29400 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A5P29400 AC027290.2-201ENST00000623210 18662 ntBASIC3.91□□□□□ -1.78
COL4A5P29400 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.91□□□□□ -1.78
COL4A5P29400 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A5P29400 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
COL4A5P29400 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
COL4A5P29400 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.91□□□□□ -1.78
COL4A5P29400 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A5P29400 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
COL4A5P29400 ARF4P3-201ENST00000397387 509 ntBASIC3.9□□□□□ -1.78
COL4A5P29400 JKAMPP1-201ENST00000413804 919 ntBASIC3.9□□□□□ -1.78
COL4A5P29400 IFNNP1-201ENST00000429219 553 ntBASIC3.9□□□□□ -1.78
COL4A5P29400 AL135938.1-201ENST00000443141 297 ntBASIC3.9□□□□□ -1.78
COL4A5P29400 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.9□□□□□ -1.78
COL4A5P29400 OR2A20P-203ENST00000498397 1268 ntBASIC3.9□□□□□ -1.78
COL4A5P29400 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.9□□□□□ -1.78
COL4A5P29400 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.9□□□□□ -1.78
COL4A5P29400 AP000926.4-201ENST00000527351 454 ntBASIC3.9□□□□□ -1.78
COL4A5P29400 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC3.9□□□□□ -1.78
COL4A5P29400 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.9□□□□□ -1.78
COL4A5P29400 AC136601.2-201ENST00000604356 474 ntBASIC3.9□□□□□ -1.78
COL4A5P29400 SNORD39.4-201ENST00000620099 78 ntBASIC3.9□□□□□ -1.78
COL4A5P29400 AL590240.3-201ENST00000621416 943 ntBASIC3.9□□□□□ -1.78
COL4A5P29400 AC138627.1-204ENST00000641894 765 ntBASIC3.9□□□□□ -1.78
COL4A5P29400 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
COL4A5P29400 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
COL4A5P29400 ZNF90P1-201ENST00000480493 1951 ntBASIC3.9□□□□□ -1.78
COL4A5P29400 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.78
COL4A5P29400 AC125336.1-201ENST00000508893 2827 ntBASIC3.9□□□□□ -1.79
COL4A5P29400 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A5P29400 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.9□□□□□ -1.79
COL4A5P29400 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A5P29400 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.9□□□□□ -1.79
COL4A5P29400 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
COL4A5P29400 SETP5-201ENST00000437270 562 ntBASIC3.9□□□□□ -1.79
COL4A5P29400 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC3.9□□□□□ -1.79
COL4A5P29400 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.9□□□□□ -1.79
COL4A5P29400 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.9□□□□□ -1.79
COL4A5P29400 AC006518.1-201ENST00000541449 943 ntBASIC3.9□□□□□ -1.79
COL4A5P29400 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.9□□□□□ -1.79
COL4A5P29400 AL157817.1-201ENST00000614264 790 ntBASIC3.9□□□□□ -1.79
COL4A5P29400 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.9□□□□□ -1.79
COL4A5P29400 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A5P29400 AC005261.6-201ENST00000623072 1387 ntBASIC3.9□□□□□ -1.79
COL4A5P29400 AL451142.2-201ENST00000429076 2090 ntBASIC3.9□□□□□ -1.79
COL4A5P29400 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.9□□□□□ -1.79
COL4A5P29400 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.9□□□□□ -1.79
COL4A5P29400 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A5P29400 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A5P29400 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.89□□□□□ -1.79
COL4A5P29400 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.89□□□□□ -1.79
COL4A5P29400 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
COL4A5P29400 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.89□□□□□ -1.79
COL4A5P29400 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.89□□□□□ -1.79
COL4A5P29400 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
COL4A5P29400 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
COL4A5P29400 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A5P29400 OR5J1P-201ENST00000313544 939 ntBASIC3.89□□□□□ -1.79
COL4A5P29400 AC062016.1-201ENST00000355719 319 ntBASIC3.89□□□□□ -1.79
COL4A5P29400 RPL6P21-201ENST00000418672 846 ntBASIC3.89□□□□□ -1.79
COL4A5P29400 HSPE1P16-201ENST00000426640 348 ntBASIC3.89□□□□□ -1.79
COL4A5P29400 PTP4A1P3-201ENST00000433661 420 ntBASIC3.89□□□□□ -1.79
COL4A5P29400 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A5P29400 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.89□□□□□ -1.79
COL4A5P29400 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms