Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 OR9N1P-201ENST00000491296 333 ntBASIC3.4□□□□□ -1.86
COL6A3P12111 PPBPP1-201ENST00000510807 373 ntBASIC3.4□□□□□ -1.86
COL6A3P12111 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.4□□□□□ -1.86
COL6A3P12111 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.4□□□□□ -1.86
COL6A3P12111 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.4□□□□□ -1.86
COL6A3P12111 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.4□□□□□ -1.86
COL6A3P12111 OR4K7P-201ENST00000580232 945 ntBASIC3.4□□□□□ -1.86
COL6A3P12111 AC008759.1-201ENST00000589783 983 ntBASIC3.4□□□□□ -1.86
COL6A3P12111 AC007619.2-201ENST00000605743 379 ntBASIC3.4□□□□□ -1.86
COL6A3P12111 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
COL6A3P12111 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.4□□□□□ -1.87
COL6A3P12111 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
COL6A3P12111 AL591473.1-201ENST00000464297 313 ntBASIC3.4□□□□□ -1.87
COL6A3P12111 AC009812.2-201ENST00000517657 457 ntBASIC3.4□□□□□ -1.87
COL6A3P12111 AC087888.1-201ENST00000550884 1254 ntBASIC3.4□□□□□ -1.87
COL6A3P12111 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.4□□□□□ -1.87
COL6A3P12111 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.4□□□□□ -1.87
COL6A3P12111 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
COL6A3P12111 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC3.39□□□□□ -1.87
COL6A3P12111 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL6A3P12111 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL6A3P12111 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL6A3P12111 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.39□□□□□ -1.87
COL6A3P12111 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL6A3P12111 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC3.39□□□□□ -1.87
COL6A3P12111 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL6A3P12111 SKP1P3-201ENST00000429280 487 ntBASIC3.39□□□□□ -1.87
COL6A3P12111 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL6A3P12111 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL6A3P12111 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC3.39□□□□□ -1.87
COL6A3P12111 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
COL6A3P12111 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL6A3P12111 RPS3P1-201ENST00000456781 192 ntBASIC3.39□□□□□ -1.87
COL6A3P12111 AC034159.1-201ENST00000513885 583 ntBASIC3.39□□□□□ -1.87
COL6A3P12111 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC3.39□□□□□ -1.87
COL6A3P12111 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL6A3P12111 AL133247.2-201ENST00000603236 482 ntBASIC3.39□□□□□ -1.87
COL6A3P12111 AL392112.1-201ENST00000605115 829 ntBASIC3.39□□□□□ -1.87
COL6A3P12111 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC3.39□□□□□ -1.87
COL6A3P12111 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC3.39□□□□□ -1.87
COL6A3P12111 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.39□□□□□ -1.87
COL6A3P12111 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL6A3P12111 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL6A3P12111 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC3.39□□□□□ -1.87
COL6A3P12111 NPM1P25-201ENST00000429734 854 ntBASIC3.39□□□□□ -1.87
COL6A3P12111 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.39□□□□□ -1.87
COL6A3P12111 VN1R40P-201ENST00000455196 941 ntBASIC3.39□□□□□ -1.87
COL6A3P12111 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL6A3P12111 AC023598.1-201ENST00000472521 361 ntBASIC3.39□□□□□ -1.87
COL6A3P12111 AC138832.1-201ENST00000522871 556 ntBASIC3.39□□□□□ -1.87
COL6A3P12111 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.39□□□□□ -1.87
COL6A3P12111 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.39□□□□□ -1.87
COL6A3P12111 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.39□□□□□ -1.87
COL6A3P12111 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.39□□□□□ -1.87
COL6A3P12111 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.38□□□□□ -1.87
COL6A3P12111 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL6A3P12111 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL6A3P12111 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
COL6A3P12111 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC3.38□□□□□ -1.87
COL6A3P12111 AL161781.1-201ENST00000354277 403 ntBASIC3.38□□□□□ -1.87
COL6A3P12111 AL139415.2-201ENST00000431968 163 ntBASIC3.38□□□□□ -1.87
COL6A3P12111 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.38□□□□□ -1.87
COL6A3P12111 AC091179.1-201ENST00000461606 579 ntBASIC3.38□□□□□ -1.87
COL6A3P12111 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.38□□□□□ -1.87
COL6A3P12111 AC107016.2-201ENST00000547968 190 ntBASIC3.38□□□□□ -1.87
COL6A3P12111 AC015712.3-201ENST00000559380 164 ntBASIC3.38□□□□□ -1.87
COL6A3P12111 ISCA1P3-201ENST00000577104 373 ntBASIC3.38□□□□□ -1.87
COL6A3P12111 AC103798.2-201ENST00000624292 632 ntBASIC3.38□□□□□ -1.87
COL6A3P12111 Z95327.2-201ENST00000414579 1873 ntBASIC3.38□□□□□ -1.87
COL6A3P12111 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.38□□□□□ -1.87
COL6A3P12111 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.38□□□□□ -1.87
COL6A3P12111 AC109329.2-201ENST00000519658 482 ntBASIC3.38□□□□□ -1.87
COL6A3P12111 AC010306.1-201ENST00000523223 1117 ntBASIC3.38□□□□□ -1.87
COL6A3P12111 OR4R3P-201ENST00000525084 838 ntBASIC3.38□□□□□ -1.87
COL6A3P12111 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC3.38□□□□□ -1.87
COL6A3P12111 AP000255.1-201ENST00000610276 676 ntBASIC3.38□□□□□ -1.87
COL6A3P12111 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL6A3P12111 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL6A3P12111 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL6A3P12111 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
COL6A3P12111 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL6A3P12111 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC3.37□□□□□ -1.87
COL6A3P12111 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC3.37□□□□□ -1.87
COL6A3P12111 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.37□□□□□ -1.87
COL6A3P12111 VTA1P1-201ENST00000414044 866 ntBASIC3.37□□□□□ -1.87
COL6A3P12111 AC006480.1-201ENST00000449887 378 ntBASIC3.37□□□□□ -1.87
COL6A3P12111 KLHL2P1-201ENST00000508691 521 ntBASIC3.37□□□□□ -1.87
COL6A3P12111 COX6CP8-201ENST00000522620 226 ntBASIC3.37□□□□□ -1.87
COL6A3P12111 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.37□□□□□ -1.87
COL6A3P12111 MTND6P33-201ENST00000571794 183 ntBASIC3.37□□□□□ -1.87
COL6A3P12111 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC3.37□□□□□ -1.87
COL6A3P12111 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC3.37□□□□□ -1.87
COL6A3P12111 CR383658.2-201ENST00000547576 1525 ntBASIC3.37□□□□□ -1.87
COL6A3P12111 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC3.37□□□□□ -1.87
COL6A3P12111 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
COL6A3P12111 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC3.37□□□□□ -1.87
COL6A3P12111 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.37□□□□□ -1.87
COL6A3P12111 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
COL6A3P12111 GTF3AP5-201ENST00000442645 697 ntBASIC3.37□□□□□ -1.87
COL6A3P12111 AC026790.2-201ENST00000606282 430 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms