Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL356218.2-201ENST00000605264 187 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AP005137.2-201ENST00000609238 400 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AC011472.4-201ENST00000615848 491 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.02□□□□□ -1.77
LMX1BO60663 AC140113.4-201ENST00000622087 222 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 RBM12B-AS1-201ENST00000623283 653 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.02□□□□□ -1.77
LMX1BO60663 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
LMX1BO60663 NSRP1P1-201ENST00000444067 1693 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LMX1BO60663 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.02□□□□□ -1.77
LMX1BO60663 GTF2H2B-203ENST00000508065 1432 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 RBPJP2-201ENST00000618187 1444 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AL391684.1-202ENST00000641293 1636 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.02□□□□□ -1.77
LMX1BO60663 AC139713.2-215ENST00000641428 5037 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 AC092435.4-201ENST00000623012 4159 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 MAPK10-303ENST00000641324 3959 ntBASIC4.02□□□□□ -1.77
LMX1BO60663 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
LMX1BO60663 EOGT-210ENST00000615922 1931 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
LMX1BO60663 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
LMX1BO60663 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
LMX1BO60663 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.01□□□□□ -1.77
LMX1BO60663 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
LMX1BO60663 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
LMX1BO60663 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
LMX1BO60663 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
LMX1BO60663 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
LMX1BO60663 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.01□□□□□ -1.77
LMX1BO60663 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
LMX1BO60663 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
LMX1BO60663 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
LMX1BO60663 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
LMX1BO60663 MIR921-201ENST00000401133 56 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 MTCO3P30-201ENST00000426425 670 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 AP001324.1-201ENST00000428553 399 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.01□□□□□ -1.77
LMX1BO60663 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC4.01□□□□□ -1.77
LMX1BO60663 AC234064.1-201ENST00000436312 247 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC4.01□□□□□ -1.77
LMX1BO60663 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC4.01□□□□□ -1.77
LMX1BO60663 AC002542.1-201ENST00000440683 193 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC4.01□□□□□ -1.77
LMX1BO60663 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC4.01□□□□□ -1.77
LMX1BO60663 AC079776.3-201ENST00000450665 370 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC4.01□□□□□ -1.77
LMX1BO60663 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.01□□□□□ -1.77
LMX1BO60663 RPL21P134-201ENST00000453468 483 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 AC005008.1-201ENST00000456151 612 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 PPIAP21-201ENST00000464473 501 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 OR52A4P-201ENST00000472867 958 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 RN7SL817P-201ENST00000480777 288 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 LINC00888-204ENST00000487386 421 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC4.01□□□□□ -1.77
LMX1BO60663 SCARNA22-201ENST00000503991 125 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC4.01□□□□□ -1.77
LMX1BO60663 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC4.01□□□□□ -1.77
LMX1BO60663 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.01□□□□□ -1.77
LMX1BO60663 RN7SKP122-201ENST00000515923 296 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC4.01□□□□□ -1.77
LMX1BO60663 NAP1L1P1-201ENST00000524793 1063 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 AC124293.1-201ENST00000530034 493 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 CYCSP28-201ENST00000534284 321 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC4.01□□□□□ -1.77
LMX1BO60663 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
LMX1BO60663 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.01□□□□□ -1.77
LMX1BO60663 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC4.01□□□□□ -1.77
LMX1BO60663 HIGD1AP17-201ENST00000554576 276 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 RPL21P7-201ENST00000557463 483 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 CASC16-202ENST00000563844 610 ntTSL 3 BASIC4.01□□□□□ -1.77
LMX1BO60663 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC4.01□□□□□ -1.77
LMX1BO60663 AL590229.1-201ENST00000603497 542 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 AC020910.2-201ENST00000603635 610 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 CLPTM1LP1-201ENST00000604519 484 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 AC091979.2-201ENST00000607514 214 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 AL353600.1-201ENST00000608148 251 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 AC023158.2-201ENST00000614876 543 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 MLECP1-201ENST00000615893 709 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.01□□□□□ -1.77
LMX1BO60663 AC087821.2-201ENST00000637086 450 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
LMX1BO60663 UGT2B26P-201ENST00000508672 1613 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.01□□□□□ -1.77
LMX1BO60663 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
LMX1BO60663 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.01□□□□□ -1.77
LMX1BO60663 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
LMX1BO60663 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
LMX1BO60663 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
LMX1BO60663 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
LMX1BO60663 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.01□□□□□ -1.77
LMX1BO60663 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
LMX1BO60663 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
LMX1BO60663 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4□□□□□ -1.77
LMX1BO60663 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4□□□□□ -1.77
LMX1BO60663 MTND4P31-201ENST00000425607 1343 ntBASIC4□□□□□ -1.77
LMX1BO60663 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC4□□□□□ -1.77
LMX1BO60663 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
LMX1BO60663 IL6STP1-201ENST00000346911 1020 ntBASIC4□□□□□ -1.77
LMX1BO60663 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms