Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 RNU4-73P-201ENST00000363164 141 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 RNA5SP394-201ENST00000364216 119 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 RNU6-282P-201ENST00000365357 103 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 DHFRP6-201ENST00000401776 268 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AL356057.2-201ENST00000403318 432 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AL359704.1-201ENST00000411586 781 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 OR2AT2P-201ENST00000413438 905 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 SDCBPP3-201ENST00000419629 891 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 SNRPEP10-201ENST00000420249 274 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AL590399.2-201ENST00000427536 309 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC008850.1-201ENST00000427546 362 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 CRIP1P1-201ENST00000427567 185 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 USP9YP9-201ENST00000429406 715 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 RPL37P1-201ENST00000432310 284 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 GAPDHP48-201ENST00000436626 961 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 HMGB3P12-201ENST00000438745 556 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 SDCBPP1-201ENST00000440192 890 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC064862.4-201ENST00000442180 334 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 HMGN1P36-201ENST00000446623 298 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 FRG2FP-204ENST00000453982 852 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 SETP20-201ENST00000457046 852 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 NXT1P1-201ENST00000458481 316 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 RPL31P50-201ENST00000471002 296 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 RN7SL570P-201ENST00000484405 292 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC023194.1-201ENST00000493084 308 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC009120.1-201ENST00000493458 473 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC005912.1-201ENST00000495392 255 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC105384.2-201ENST00000508433 640 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC074255.1-201ENST00000511259 501 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 SOD1P3-201ENST00000518682 454 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 COX6CP8-201ENST00000522620 226 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AL163952.1-202ENST00000569625 600 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC007621.1-201ENST00000604544 437 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AL133481.2-203ENST00000607558 139 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC243654.2-201ENST00000612843 443 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC009233.1-201ENST00000616477 371 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AP006248.2-201ENST00000623309 592 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 U6.101-201ENST00000637707 76 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC024614.3-201ENST00000637860 256 ntBASIC5.4□□□□□ -1.54
PTCHD1Q96NR3 AC097504.1-201ENST00000515103 2415 ntBASIC5.4□□□□□ -1.55
PTCHD1Q96NR3 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
PTCHD1Q96NR3 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
PTCHD1Q96NR3 AC011933.2-201ENST00000578539 2790 ntBASIC5.4□□□□□ -1.55
PTCHD1Q96NR3 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.4□□□□□ -1.55
PTCHD1Q96NR3 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
PTCHD1Q96NR3 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
PTCHD1Q96NR3 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
PTCHD1Q96NR3 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
PTCHD1Q96NR3 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
PTCHD1Q96NR3 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.4□□□□□ -1.55
PTCHD1Q96NR3 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
PTCHD1Q96NR3 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 BCORP1-203ENST00000513194 5093 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 MFSD8-239ENST00000641590 2479 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AC093775.1-201ENST00000624154 1868 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms