Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC027559.1-201ENST00000636288 271 ntBASIC6.11□□□□□ -1.43
MSX1P28360 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX1P28360 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC6.11□□□□□ -1.43
MSX1P28360 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX1P28360 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX1P28360 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX1P28360 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX1P28360 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MSX1P28360 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC6.11□□□□□ -1.43
MSX1P28360 RACGAP1P-201ENST00000550663 1879 ntBASIC6.11□□□□□ -1.43
MSX1P28360 AC011460.1-201ENST00000636268 1834 ntBASIC6.11□□□□□ -1.43
MSX1P28360 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
MSX1P28360 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC6.11□□□□□ -1.43
MSX1P28360 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC6.11□□□□□ -1.43
MSX1P28360 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
MSX1P28360 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX1P28360 ZNF519P1-201ENST00000449011 1626 ntBASIC6.1□□□□□ -1.43
MSX1P28360 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX1P28360 AC002525.1-201ENST00000624392 1622 ntBASIC6.1□□□□□ -1.43
MSX1P28360 AP003486.1-201ENST00000525716 3994 ntBASIC6.1□□□□□ -1.43
MSX1P28360 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
MSX1P28360 AC032011.1-201ENST00000611703 1549 ntBASIC6.1□□□□□ -1.43
MSX1P28360 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX1P28360 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC6.1□□□□□ -1.43
MSX1P28360 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 TMCC1P1-201ENST00000518897 1980 ntBASIC6.1□□□□□ -1.43
MSX1P28360 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 SNORA38B-201ENST00000363524 131 ntBASIC6.1□□□□□ -1.43
MSX1P28360 U3.11-201ENST00000364476 212 ntBASIC6.1□□□□□ -1.43
MSX1P28360 SNORD116-11-201ENST00000383882 92 ntBASIC6.1□□□□□ -1.43
MSX1P28360 RNU6-641P-201ENST00000384006 107 ntBASIC6.1□□□□□ -1.43
MSX1P28360 RNU6-225P-201ENST00000384613 103 ntBASIC6.1□□□□□ -1.43
MSX1P28360 U3.20-201ENST00000390909 217 ntBASIC6.1□□□□□ -1.43
MSX1P28360 RNU6-1109P-201ENST00000391187 107 ntBASIC6.1□□□□□ -1.43
MSX1P28360 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 OFD1P1Y-201ENST00000411756 1225 ntBASIC6.1□□□□□ -1.43
MSX1P28360 AL356968.1-201ENST00000416622 474 ntBASIC6.1□□□□□ -1.43
MSX1P28360 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC6.1□□□□□ -1.43
MSX1P28360 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX1P28360 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX1P28360 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX1P28360 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX1P28360 AC022022.1-201ENST00000430304 178 ntBASIC6.1□□□□□ -1.43
MSX1P28360 DNAJC19P5-201ENST00000443295 316 ntBASIC6.1□□□□□ -1.43
MSX1P28360 RN7SL170P-201ENST00000487098 295 ntBASIC6.1□□□□□ -1.43
MSX1P28360 HIGD1AP14-201ENST00000507617 282 ntBASIC6.1□□□□□ -1.43
MSX1P28360 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX1P28360 RNU4ATAC7P-201ENST00000516280 125 ntBASIC6.1□□□□□ -1.43
MSX1P28360 RNY3P15-201ENST00000516297 97 ntBASIC6.1□□□□□ -1.43
MSX1P28360 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC6.1□□□□□ -1.43
MSX1P28360 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX1P28360 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX1P28360 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX1P28360 OR8R1P-201ENST00000543943 764 ntBASIC6.1□□□□□ -1.43
MSX1P28360 GNG2-203ENST00000553432 577 ntTSL 4 BASIC6.1□□□□□ -1.43
MSX1P28360 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX1P28360 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX1P28360 MIR5095-201ENST00000578844 88 ntBASIC6.1□□□□□ -1.43
MSX1P28360 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
MSX1P28360 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX1P28360 AC020634.1-201ENST00000608701 549 ntBASIC6.1□□□□□ -1.43
MSX1P28360 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC6.1□□□□□ -1.43
MSX1P28360 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC6.1□□□□□ -1.43
MSX1P28360 AC067931.1-201ENST00000624190 671 ntBASIC6.1□□□□□ -1.43
MSX1P28360 RACK1-235ENST00000626067 564 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX1P28360 U2.22-201ENST00000636441 106 ntBASIC6.1□□□□□ -1.43
MSX1P28360 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 MAPK10-344ENST00000641718 3746 ntBASIC6.1□□□□□ -1.43
MSX1P28360 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
MSX1P28360 AL442128.2-201ENST00000620246 1824 ntBASIC6.1□□□□□ -1.43
MSX1P28360 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC6.1□□□□□ -1.43
MSX1P28360 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.1□□□□□ -1.43
MSX1P28360 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
MSX1P28360 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
MSX1P28360 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.1□□□□□ -1.43
MSX1P28360 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX1P28360 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX1P28360 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX1P28360 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX1P28360 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX1P28360 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.09□□□□□ -1.43
MSX1P28360 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
MSX1P28360 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSX1P28360 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSX1P28360 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSX1P28360 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSX1P28360 RNA5SP514-201ENST00000363717 111 ntBASIC6.09□□□□□ -1.43
MSX1P28360 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSX1P28360 MIR323B-201ENST00000385269 82 ntBASIC6.09□□□□□ -1.43
MSX1P28360 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 124.3 ms