Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.82□□□□□ -1.48
SMC1BQ8NDV3 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.82□□□□□ -1.48
SMC1BQ8NDV3 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SMC1BQ8NDV3 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SMC1BQ8NDV3 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SMC1BQ8NDV3 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.82□□□□□ -1.48
SMC1BQ8NDV3 MUC2-202ENST00000613187 4845 ntBASIC5.82□□□□□ -1.48
SMC1BQ8NDV3 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.82□□□□□ -1.48
SMC1BQ8NDV3 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SMC1BQ8NDV3 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
SMC1BQ8NDV3 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 HSPA8P17-201ENST00000427029 1382 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC019072.1-201ENST00000604535 1551 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC092376.2-201ENST00000622621 4116 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AL391994.1-201ENST00000254724 282 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 RNU6-1066P-201ENST00000363573 105 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 RNU6-253P-201ENST00000384730 105 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 RNU6-628P-201ENST00000410675 107 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 RNU2-42P-201ENST00000410697 113 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 CRYBB2P1-203ENST00000415709 538 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 RPL7AP25-201ENST00000423357 805 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC129850.1-201ENST00000436203 508 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 RPS29P9-201ENST00000440360 171 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 RPS4XP12-201ENST00000461747 709 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 RPL7P41-201ENST00000485823 957 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 ACTG1P13-201ENST00000486987 1043 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC008885.2-201ENST00000509506 930 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC098976.1-201ENST00000513014 541 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 ACTR3BP3-201ENST00000565577 979 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 VN1R90P-201ENST00000595717 726 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC103881.1-201ENST00000603476 538 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC133552.5-201ENST00000604266 540 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC091979.2-201ENST00000607514 214 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AP005019.3-201ENST00000620418 560 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC124312.6-202ENST00000623624 418 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AP000843.1-201ENST00000624880 701 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC025031.4-201ENST00000621248 3271 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 AC008079.2-201ENST00000623543 20396 ntBASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SMC1BQ8NDV3 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 Y_RNA.51-201ENST00000362725 102 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 RNU5D-1-201ENST00000363299 116 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 SNORA2.3-201ENST00000383920 135 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 Y_RNA.560-201ENST00000384689 102 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 MIR589-201ENST00000385238 99 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 PTMAP2-201ENST00000397627 327 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 RNA5SP317-201ENST00000410176 116 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 RNA5SP311-201ENST00000411290 116 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AC234782.4-201ENST00000417646 1048 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 DYNLL1P7-201ENST00000429273 258 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AC073465.2-201ENST00000440938 498 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 LINC02210-201ENST00000444561 288 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 PRSS3P4-201ENST00000453323 162 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 RPS27P23-201ENST00000487608 251 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 SETP14-201ENST00000497538 873 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms