Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC7.08□□□□□ -1.28
COL9A1P20849 ZNF605-202ENST00000360187 9340 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 NLRC4-204ENST00000404025 3581 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
COL9A1P20849 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 AP2B1-213ENST00000612116 3483 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC7.08□□□□□ -1.28
COL9A1P20849 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 SLC36A2-201ENST00000335244 3421 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
COL9A1P20849 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 AL359263.1-201ENST00000441188 2796 ntBASIC7.08□□□□□ -1.28
COL9A1P20849 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC7.08□□□□□ -1.28
COL9A1P20849 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 HNRNPC-211ENST00000554455 1784 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL9A1P20849 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL9A1P20849 PPARA-203ENST00000407236 9995 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL9A1P20849 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL9A1P20849 SAMMSON-222ENST00000641901 2727 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 WDR64-204ENST00000437684 2310 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL9A1P20849 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC7.07□□□□□ -1.28
COL9A1P20849 AC099753.1-201ENST00000634947 2118 ntTSL 5 BASIC7.07□□□□□ -1.28
COL9A1P20849 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC7.07□□□□□ -1.28
COL9A1P20849 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL9A1P20849 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
COL9A1P20849 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL9A1P20849 CTAGE1-201ENST00000391403 4313 ntAPPRIS P2 BASIC7.07□□□□□ -1.28
COL9A1P20849 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL9A1P20849 HSPD1P8-201ENST00000400121 1658 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 AC134882.1-201ENST00000603738 1676 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 AC027287.1-201ENST00000553115 1453 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL9A1P20849 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL9A1P20849 RNU6-434P-201ENST00000384376 107 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 RNU6-393P-201ENST00000384475 107 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
COL9A1P20849 SNORA16.2-201ENST00000390991 127 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 AL603910.2-201ENST00000407268 136 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC7.07□□□□□ -1.28
COL9A1P20849 GAPDHP33-201ENST00000443168 1013 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 NDUFB4P10-201ENST00000452541 359 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 RPL7P49-201ENST00000471402 708 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC7.07□□□□□ -1.28
COL9A1P20849 AC117503.1-201ENST00000472241 394 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 RN7SL826P-201ENST00000479724 288 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 RPS10P20-201ENST00000494130 463 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 Y_RNA.683-201ENST00000516508 93 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 AC120036.3-201ENST00000517826 292 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 AC012339.2-201ENST00000523996 453 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC7.07□□□□□ -1.28
COL9A1P20849 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC7.07□□□□□ -1.28
COL9A1P20849 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL9A1P20849 AC109446.1-201ENST00000566172 220 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 AL138889.2-201ENST00000603883 242 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 5S_rRNA.23-201ENST00000612086 102 ntBASIC7.07□□□□□ -1.28
COL9A1P20849 GLUD1P2-202ENST00000630097 606 ntTSL 3 BASIC7.07□□□□□ -1.28
COL9A1P20849 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL9A1P20849 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL9A1P20849 UBE2V1-204ENST00000371677 2459 ntTSL 2 BASIC7.07□□□□□ -1.28
COL9A1P20849 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC7.07□□□□□ -1.28
COL9A1P20849 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL9A1P20849 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC7.07□□□□□ -1.28
COL9A1P20849 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL9A1P20849 TDRKH-201ENST00000368822 3093 ntAPPRIS P2 TSL 5 BASIC7.07□□□□□ -1.28
COL9A1P20849 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
COL9A1P20849 MID1-204ENST00000380782 3352 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL9A1P20849 AC006141.1-201ENST00000581917 2170 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC7.06□□□□□ -1.28
COL9A1P20849 MAPK10-280ENST00000641166 2684 ntAPPRIS ALT1 BASIC7.06□□□□□ -1.28
COL9A1P20849 ZNF502-204ENST00000449836 3173 ntAPPRIS P1 TSL 3 BASIC7.06□□□□□ -1.28
COL9A1P20849 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
COL9A1P20849 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL9A1P20849 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL9A1P20849 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL9A1P20849 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL9A1P20849 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL9A1P20849 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL9A1P20849 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC7.06□□□□□ -1.28
COL9A1P20849 ABCA6-201ENST00000284425 5300 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL9A1P20849 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
COL9A1P20849 Y_RNA.84-201ENST00000363011 104 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 RNA5SP140-201ENST00000364524 92 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 RPL12P23-201ENST00000405880 490 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
COL9A1P20849 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC7.06□□□□□ -1.28
COL9A1P20849 MYL6P3-201ENST00000436904 432 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC7.06□□□□□ -1.28
COL9A1P20849 AC009963.2-201ENST00000453431 138 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 AC099340.1-201ENST00000475247 599 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 AC066616.1-201ENST00000486795 413 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 RPL23AP55-201ENST00000498163 452 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC7.06□□□□□ -1.28
COL9A1P20849 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC7.06□□□□□ -1.28
COL9A1P20849 LEF1-218ENST00000512172 598 ntTSL 2 BASIC7.06□□□□□ -1.28
COL9A1P20849 AC093853.1-201ENST00000515689 483 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 RNA5SP318-201ENST00000516352 92 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 IGLVV-66-201ENST00000523818 341 ntBASIC7.06□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms