Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
HSPG2P98160 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC2.1□□□□□ -2.07
HSPG2P98160 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HSPG2P98160 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HSPG2P98160 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC2.1□□□□□ -2.07
HSPG2P98160 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
HSPG2P98160 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC2.1□□□□□ -2.07
HSPG2P98160 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HSPG2P98160 AL672296.1-201ENST00000427780 2158 ntBASIC2.1□□□□□ -2.07
HSPG2P98160 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC2.1□□□□□ -2.07
HSPG2P98160 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.1□□□□□ -2.07
HSPG2P98160 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
HSPG2P98160 AC007899.1-201ENST00000412776 775 ntBASIC2.1□□□□□ -2.07
HSPG2P98160 MYL8P-204ENST00000431574 518 ntBASIC2.1□□□□□ -2.07
HSPG2P98160 AC109329.2-201ENST00000519658 482 ntBASIC2.1□□□□□ -2.07
HSPG2P98160 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC2.1□□□□□ -2.07
HSPG2P98160 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC2.1□□□□□ -2.07
HSPG2P98160 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.1□□□□□ -2.07
HSPG2P98160 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC2.1□□□□□ -2.07
HSPG2P98160 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC2.1□□□□□ -2.07
HSPG2P98160 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC2.1□□□□□ -2.07
HSPG2P98160 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HSPG2P98160 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
HSPG2P98160 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
HSPG2P98160 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HSPG2P98160 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
HSPG2P98160 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC2.1□□□□□ -2.07
HSPG2P98160 DDX6P1-205ENST00000441966 1436 ntBASIC2.1□□□□□ -2.07
HSPG2P98160 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HSPG2P98160 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
HSPG2P98160 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HSPG2P98160 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC2.1□□□□□ -2.07
HSPG2P98160 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HSPG2P98160 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC2.1□□□□□ -2.07
HSPG2P98160 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC2.1□□□□□ -2.07
HSPG2P98160 BX119904.1-201ENST00000432026 348 ntBASIC2.1□□□□□ -2.07
HSPG2P98160 KCTD9P3-201ENST00000434597 1169 ntBASIC2.1□□□□□ -2.07
HSPG2P98160 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC2.1□□□□□ -2.07
HSPG2P98160 AC022080.3-201ENST00000544433 482 ntBASIC2.1□□□□□ -2.07
HSPG2P98160 AC090877.1-201ENST00000561418 344 ntBASIC2.1□□□□□ -2.07
HSPG2P98160 MTND6P33-201ENST00000571794 183 ntBASIC2.1□□□□□ -2.07
HSPG2P98160 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC2.1□□□□□ -2.07
HSPG2P98160 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC2.1□□□□□ -2.07
HSPG2P98160 AC006504.1-201ENST00000562493 3666 ntBASIC2.09□□□□□ -2.07
HSPG2P98160 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC2.09□□□□□ -2.07
HSPG2P98160 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
HSPG2P98160 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC2.09□□□□□ -2.07
HSPG2P98160 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
HSPG2P98160 MIR504-201ENST00000385065 83 ntBASIC2.09□□□□□ -2.07
HSPG2P98160 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.09□□□□□ -2.07
HSPG2P98160 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC2.09□□□□□ -2.07
HSPG2P98160 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC2.09□□□□□ -2.07
HSPG2P98160 OR7M1P-201ENST00000608946 533 ntBASIC2.09□□□□□ -2.07
HSPG2P98160 OR6R2P-201ENST00000609216 300 ntBASIC2.09□□□□□ -2.07
HSPG2P98160 AC241585.2-209ENST00000638217 143 ntBASIC2.09□□□□□ -2.07
HSPG2P98160 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
HSPG2P98160 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC2.09□□□□□ -2.07
HSPG2P98160 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC2.09□□□□□ -2.07
HSPG2P98160 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC2.09□□□□□ -2.07
HSPG2P98160 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC2.09□□□□□ -2.07
HSPG2P98160 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
HSPG2P98160 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC2.09□□□□□ -2.07
HSPG2P98160 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC2.09□□□□□ -2.07
HSPG2P98160 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
HSPG2P98160 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC2.09□□□□□ -2.07
HSPG2P98160 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC2.09□□□□□ -2.07
HSPG2P98160 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC2.09□□□□□ -2.07
HSPG2P98160 AL133247.2-201ENST00000603236 482 ntBASIC2.09□□□□□ -2.07
HSPG2P98160 AP003485.2-201ENST00000623636 610 ntBASIC2.09□□□□□ -2.07
HSPG2P98160 AL121839.2-201ENST00000565058 6943 ntBASIC2.09□□□□□ -2.07
HSPG2P98160 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.09□□□□□ -2.08
HSPG2P98160 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC2.09□□□□□ -2.08
HSPG2P98160 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
HSPG2P98160 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
HSPG2P98160 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
HSPG2P98160 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.08
HSPG2P98160 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC2.09□□□□□ -2.08
HSPG2P98160 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
HSPG2P98160 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC2.09□□□□□ -2.08
HSPG2P98160 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC2.09□□□□□ -2.08
HSPG2P98160 AL079342.1-201ENST00000401460 267 ntBASIC2.09□□□□□ -2.08
HSPG2P98160 IL6-203ENST00000401651 539 ntTSL 2 BASIC2.09□□□□□ -2.08
HSPG2P98160 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC2.09□□□□□ -2.08
HSPG2P98160 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.09□□□□□ -2.08
HSPG2P98160 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC2.09□□□□□ -2.08
HSPG2P98160 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.09□□□□□ -2.08
HSPG2P98160 CYCSP39-201ENST00000565821 309 ntBASIC2.09□□□□□ -2.08
HSPG2P98160 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC2.09□□□□□ -2.08
HSPG2P98160 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC2.09□□□□□ -2.08
HSPG2P98160 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
HSPG2P98160 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
HSPG2P98160 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC2.09□□□□□ -2.08
HSPG2P98160 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.08
HSPG2P98160 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.08
HSPG2P98160 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC2.08□□□□□ -2.08
HSPG2P98160 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
HSPG2P98160 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
HSPG2P98160 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
HSPG2P98160 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC2.08□□□□□ -2.08
HSPG2P98160 AL691447.1-201ENST00000419456 387 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms