Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
LDB2O43679 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.5□□□□□ -1.69
LDB2O43679 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.5□□□□□ -1.69
LDB2O43679 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
LDB2O43679 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LDB2O43679 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.5□□□□□ -1.69
LDB2O43679 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LDB2O43679 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
LDB2O43679 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
LDB2O43679 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LDB2O43679 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.49□□□□□ -1.69
LDB2O43679 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LDB2O43679 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LDB2O43679 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LDB2O43679 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LDB2O43679 OR4K15-201ENST00000305051 1216 ntBASIC4.49□□□□□ -1.69
LDB2O43679 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LDB2O43679 Y_RNA.192-201ENST00000363977 102 ntBASIC4.49□□□□□ -1.69
LDB2O43679 RNU6-157P-201ENST00000383957 107 ntBASIC4.49□□□□□ -1.69
LDB2O43679 SNORD116-1-201ENST00000384335 95 ntBASIC4.49□□□□□ -1.69
LDB2O43679 RPS3AP23-201ENST00000401762 784 ntBASIC4.49□□□□□ -1.69
LDB2O43679 MIR1302-8-201ENST00000408342 128 ntBASIC4.49□□□□□ -1.69
LDB2O43679 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC4.49□□□□□ -1.69
LDB2O43679 AC006960.1-201ENST00000419980 153 ntBASIC4.49□□□□□ -1.69
LDB2O43679 UQCRBP1-201ENST00000421129 336 ntBASIC4.49□□□□□ -1.69
LDB2O43679 COX6CP17-201ENST00000421389 185 ntBASIC4.49□□□□□ -1.69
LDB2O43679 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.49□□□□□ -1.69
LDB2O43679 AC004448.2-201ENST00000422360 586 ntBASIC4.49□□□□□ -1.69
LDB2O43679 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.49□□□□□ -1.69
LDB2O43679 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.49□□□□□ -1.69
LDB2O43679 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.49□□□□□ -1.69
LDB2O43679 ARL4AP3-201ENST00000441452 574 ntBASIC4.49□□□□□ -1.69
LDB2O43679 AL133477.1-201ENST00000457472 514 ntBASIC4.49□□□□□ -1.69
LDB2O43679 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LDB2O43679 AK3P4-201ENST00000504283 583 ntBASIC4.49□□□□□ -1.69
LDB2O43679 OR5H4P-201ENST00000510851 923 ntBASIC4.49□□□□□ -1.69
LDB2O43679 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.49□□□□□ -1.69
LDB2O43679 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC4.49□□□□□ -1.69
LDB2O43679 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC4.49□□□□□ -1.69
LDB2O43679 AC010306.1-201ENST00000523223 1117 ntBASIC4.49□□□□□ -1.69
LDB2O43679 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LDB2O43679 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC4.49□□□□□ -1.69
LDB2O43679 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC4.49□□□□□ -1.69
LDB2O43679 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.49□□□□□ -1.69
LDB2O43679 AC233702.9-201ENST00000581528 203 ntBASIC4.49□□□□□ -1.69
LDB2O43679 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.49□□□□□ -1.69
LDB2O43679 AC110760.3-201ENST00000598794 467 ntBASIC4.49□□□□□ -1.69
LDB2O43679 AC093765.1-201ENST00000603758 881 ntBASIC4.49□□□□□ -1.69
LDB2O43679 AC080013.3-201ENST00000606839 578 ntBASIC4.49□□□□□ -1.69
LDB2O43679 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.49□□□□□ -1.69
LDB2O43679 AC245008.1-201ENST00000608123 476 ntBASIC4.49□□□□□ -1.69
LDB2O43679 AC055764.2-201ENST00000610089 670 ntBASIC4.49□□□□□ -1.69
LDB2O43679 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LDB2O43679 AC022509.4-201ENST00000621404 572 ntBASIC4.49□□□□□ -1.69
LDB2O43679 AL049536.1-201ENST00000625043 744 ntBASIC4.49□□□□□ -1.69
LDB2O43679 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
LDB2O43679 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.49□□□□□ -1.69
LDB2O43679 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
LDB2O43679 AC120338.1-201ENST00000625074 1541 ntBASIC4.49□□□□□ -1.69
LDB2O43679 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
LDB2O43679 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.49□□□□□ -1.69
LDB2O43679 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.49□□□□□ -1.69
LDB2O43679 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
LDB2O43679 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LDB2O43679 MTND4P31-201ENST00000425607 1343 ntBASIC4.48□□□□□ -1.69
LDB2O43679 ZNF736P9Y-201ENST00000439586 1345 ntBASIC4.48□□□□□ -1.69
LDB2O43679 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LDB2O43679 RNF6P1-201ENST00000444889 1784 ntBASIC4.48□□□□□ -1.69
LDB2O43679 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LDB2O43679 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.48□□□□□ -1.69
LDB2O43679 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.48□□□□□ -1.69
LDB2O43679 RNU6-560P-201ENST00000364007 108 ntBASIC4.48□□□□□ -1.69
LDB2O43679 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
LDB2O43679 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
LDB2O43679 SNORA68.2-201ENST00000391263 128 ntBASIC4.48□□□□□ -1.69
LDB2O43679 RAB28P1-201ENST00000411517 641 ntBASIC4.48□□□□□ -1.69
LDB2O43679 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.48□□□□□ -1.69
LDB2O43679 AC114814.2-201ENST00000419195 485 ntBASIC4.48□□□□□ -1.69
LDB2O43679 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.48□□□□□ -1.69
LDB2O43679 PTP4A1P5-201ENST00000420305 455 ntBASIC4.48□□□□□ -1.69
LDB2O43679 USP9YP26-201ENST00000421008 661 ntBASIC4.48□□□□□ -1.69
LDB2O43679 AC007435.1-201ENST00000421086 415 ntBASIC4.48□□□□□ -1.69
LDB2O43679 AL365203.2-201ENST00000423444 196 ntBASIC4.48□□□□□ -1.69
LDB2O43679 MTND4P20-201ENST00000424125 869 ntBASIC4.48□□□□□ -1.69
LDB2O43679 BX119904.4-201ENST00000424402 301 ntBASIC4.48□□□□□ -1.69
LDB2O43679 AL390023.1-201ENST00000428836 262 ntBASIC4.48□□□□□ -1.69
LDB2O43679 RPL23AP25-201ENST00000430973 463 ntBASIC4.48□□□□□ -1.69
LDB2O43679 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.48□□□□□ -1.69
LDB2O43679 AC092393.1-201ENST00000439625 742 ntBASIC4.48□□□□□ -1.69
LDB2O43679 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC4.48□□□□□ -1.69
LDB2O43679 AL035551.1-201ENST00000446931 348 ntBASIC4.48□□□□□ -1.69
LDB2O43679 MTND1P29-201ENST00000448112 647 ntBASIC4.48□□□□□ -1.69
LDB2O43679 AL162591.2-201ENST00000449634 317 ntBASIC4.48□□□□□ -1.69
LDB2O43679 AC079776.3-201ENST00000450665 370 ntBASIC4.48□□□□□ -1.69
LDB2O43679 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LDB2O43679 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
LDB2O43679 OR52A4P-201ENST00000472867 958 ntBASIC4.48□□□□□ -1.69
LDB2O43679 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LDB2O43679 RN7SL809P-201ENST00000482040 297 ntBASIC4.48□□□□□ -1.69
LDB2O43679 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms