Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 AC016397.1-201ENST00000412463 242 ntBASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 OFD1P18Y-201ENST00000420889 959 ntBASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 RPEP3-201ENST00000425462 676 ntBASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 RPL36P19-201ENST00000430744 301 ntBASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 SYPL1P1-201ENST00000473622 768 ntBASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 AC118282.2-201ENST00000508739 374 ntBASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 RNU6-416P-201ENST00000516265 103 ntBASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 ARL2BPP5-201ENST00000523141 481 ntBASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 HIGD1AP5-201ENST00000529959 259 ntBASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 AP001160.4-201ENST00000596971 382 ntBASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 AC133794.1-201ENST00000602731 914 ntBASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 AC098483.2-201ENST00000603158 454 ntBASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC5.78□□□□□ -1.48
CHMP4AQ9BY43 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 OR5P1P-201ENST00000299512 925 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 SNORD6-201ENST00000365444 73 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 MIR1183-201ENST00000408856 89 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 Y_RNA.625-201ENST00000411256 107 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 Z74021.1-201ENST00000423610 407 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 RPL18P10-201ENST00000425606 538 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 RPL21P91-201ENST00000429231 479 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 HMGB1P45-201ENST00000435986 653 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 CYCSP43-201ENST00000438233 310 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 RPS26P30-201ENST00000443431 335 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 ELOCP13-201ENST00000443934 329 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 RN7SL459P-201ENST00000481078 302 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC093840.1-201ENST00000511599 336 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 OR5D17P-201ENST00000531492 978 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC092470.1-201ENST00000546187 132 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 ZNF192P1-203ENST00000565888 810 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AP005229.2-201ENST00000609980 697 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC005156.1-201ENST00000613371 573 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC091905.2-201ENST00000623143 306 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC124312.6-202ENST00000623624 418 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 AC097504.1-201ENST00000515103 2415 ntBASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
CHMP4AQ9BY43 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 RNU6-354P-201ENST00000383862 107 ntBASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 RNU6-610P-201ENST00000384264 107 ntBASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 RNU6-441P-201ENST00000384545 106 ntBASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 RPL7AP25-201ENST00000423357 805 ntBASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 LAMTOR3P1-201ENST00000428620 370 ntBASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 AL590762.3-201ENST00000436372 640 ntBASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 RAB11AP1-201ENST00000442978 646 ntBASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 AC092451.1-201ENST00000480211 153 ntBASIC5.76□□□□□ -1.49
CHMP4AQ9BY43 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms