Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC016727.1-205ENST00000605437 569 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 AC005086.4-201ENST00000623065 213 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL6A3P12111 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL6A3P12111 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC3.52□□□□□ -1.85
COL6A3P12111 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
COL6A3P12111 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
COL6A3P12111 AC058791.1-201ENST00000608412 3198 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.52□□□□□ -1.85
COL6A3P12111 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL6A3P12111 MIR512-1-201ENST00000384913 84 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
COL6A3P12111 SAGE2P-201ENST00000420011 2126 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 OR2AH1P-201ENST00000425717 928 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 SEPT7P6-201ENST00000469999 1143 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 CYCSP28-201ENST00000534284 321 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC3.52□□□□□ -1.85
COL6A3P12111 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.52□□□□□ -1.85
COL6A3P12111 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 AL356274.1-201ENST00000617064 410 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC3.52□□□□□ -1.85
COL6A3P12111 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL6A3P12111 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL6A3P12111 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL6A3P12111 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.51□□□□□ -1.85
COL6A3P12111 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL6A3P12111 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.51□□□□□ -1.85
COL6A3P12111 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC3.51□□□□□ -1.85
COL6A3P12111 AL513328.1-201ENST00000446460 224 ntBASIC3.51□□□□□ -1.85
COL6A3P12111 AC010655.1-201ENST00000449336 292 ntBASIC3.51□□□□□ -1.85
COL6A3P12111 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.51□□□□□ -1.85
COL6A3P12111 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.51□□□□□ -1.85
COL6A3P12111 LSM3P2-201ENST00000551246 273 ntBASIC3.51□□□□□ -1.85
COL6A3P12111 AC127024.5-201ENST00000580085 462 ntBASIC3.51□□□□□ -1.85
COL6A3P12111 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
COL6A3P12111 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC3.51□□□□□ -1.85
COL6A3P12111 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
COL6A3P12111 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
COL6A3P12111 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
COL6A3P12111 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL6A3P12111 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
COL6A3P12111 HMGN2P27-201ENST00000427352 270 ntBASIC3.51□□□□□ -1.85
COL6A3P12111 FTH1P6-201ENST00000430768 320 ntBASIC3.51□□□□□ -1.85
COL6A3P12111 RPL23AP23-201ENST00000452590 471 ntBASIC3.51□□□□□ -1.85
COL6A3P12111 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.51□□□□□ -1.85
COL6A3P12111 CREM-238ENST00000488741 651 ntTSL 2 BASIC3.51□□□□□ -1.85
COL6A3P12111 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.51□□□□□ -1.85
COL6A3P12111 CYCSP39-201ENST00000565821 309 ntBASIC3.51□□□□□ -1.85
COL6A3P12111 AC006946.3-201ENST00000609791 756 ntBASIC3.51□□□□□ -1.85
COL6A3P12111 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC3.51□□□□□ -1.85
COL6A3P12111 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC3.51□□□□□ -1.85
COL6A3P12111 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL6A3P12111 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL6A3P12111 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL6A3P12111 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL6A3P12111 RPS24P12-201ENST00000402084 394 ntBASIC3.51□□□□□ -1.85
COL6A3P12111 MIR1289-2-201ENST00000408360 111 ntBASIC3.51□□□□□ -1.85
COL6A3P12111 OR51A6P-201ENST00000418680 1004 ntBASIC3.51□□□□□ -1.85
COL6A3P12111 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.51□□□□□ -1.85
COL6A3P12111 AC095038.2-201ENST00000621464 1070 ntBASIC3.51□□□□□ -1.85
COL6A3P12111 HSPD1P11-201ENST00000508643 1702 ntBASIC3.51□□□□□ -1.85
COL6A3P12111 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL6A3P12111 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL6A3P12111 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
COL6A3P12111 PALLD-201ENST00000261509 5809 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL6A3P12111 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
COL6A3P12111 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
COL6A3P12111 AC006484.1-201ENST00000435086 1884 ntBASIC3.5□□□□□ -1.85
COL6A3P12111 AC046144.1-201ENST00000478559 1853 ntBASIC3.5□□□□□ -1.85
COL6A3P12111 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL6A3P12111 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL6A3P12111 RPS27AP9-201ENST00000477681 438 ntBASIC3.5□□□□□ -1.85
COL6A3P12111 MORF4L2P1-201ENST00000503761 858 ntBASIC3.5□□□□□ -1.85
COL6A3P12111 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.5□□□□□ -1.85
COL6A3P12111 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC3.5□□□□□ -1.85
COL6A3P12111 RNU6-548P-201ENST00000517083 115 ntBASIC3.5□□□□□ -1.85
COL6A3P12111 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.5□□□□□ -1.85
COL6A3P12111 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.5□□□□□ -1.85
COL6A3P12111 AC009852.2-201ENST00000567898 485 ntBASIC3.5□□□□□ -1.85
COL6A3P12111 AL354950.1-201ENST00000614150 568 ntBASIC3.5□□□□□ -1.85
COL6A3P12111 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC3.5□□□□□ -1.85
COL6A3P12111 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
COL6A3P12111 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL6A3P12111 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
COL6A3P12111 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL6A3P12111 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
COL6A3P12111 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
COL6A3P12111 UBTFL3-201ENST00000418934 1024 ntBASIC3.5□□□□□ -1.85
COL6A3P12111 RPL23AP89-201ENST00000439324 255 ntBASIC3.5□□□□□ -1.85
COL6A3P12111 TRIM60P18-201ENST00000441518 828 ntBASIC3.5□□□□□ -1.85
COL6A3P12111 ATP5C1P1-201ENST00000441945 895 ntBASIC3.5□□□□□ -1.85
COL6A3P12111 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
COL6A3P12111 UBTFL6-201ENST00000477929 1024 ntBASIC3.5□□□□□ -1.85
COL6A3P12111 HMGB3P16-201ENST00000508037 287 ntBASIC3.5□□□□□ -1.85
COL6A3P12111 RN7SKP46-201ENST00000515942 234 ntBASIC3.5□□□□□ -1.85
COL6A3P12111 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.5□□□□□ -1.85
COL6A3P12111 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.5□□□□□ -1.85
COL6A3P12111 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.5□□□□□ -1.85
COL6A3P12111 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL6A3P12111 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 177.9 ms