Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.08□□□□□ -1.76
SDC3O75056 AC092685.1-201ENST00000447960 1243 ntBASIC4.08□□□□□ -1.76
SDC3O75056 RNA5SP246-201ENST00000458909 119 ntBASIC4.08□□□□□ -1.76
SDC3O75056 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
SDC3O75056 GAPDHP36-201ENST00000480688 918 ntBASIC4.08□□□□□ -1.76
SDC3O75056 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SDC3O75056 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC4.08□□□□□ -1.76
SDC3O75056 FTH1P24-201ENST00000503502 462 ntBASIC4.08□□□□□ -1.76
SDC3O75056 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SDC3O75056 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.08□□□□□ -1.76
SDC3O75056 AC008628.1-201ENST00000508663 265 ntBASIC4.08□□□□□ -1.76
SDC3O75056 AC027338.1-201ENST00000514840 825 ntBASIC4.08□□□□□ -1.76
SDC3O75056 RNA5SP143-201ENST00000516936 115 ntBASIC4.08□□□□□ -1.76
SDC3O75056 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.08□□□□□ -1.76
SDC3O75056 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC4.08□□□□□ -1.76
SDC3O75056 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.08□□□□□ -1.76
SDC3O75056 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.08□□□□□ -1.76
SDC3O75056 AC069240.1-201ENST00000548774 375 ntBASIC4.08□□□□□ -1.76
SDC3O75056 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.08□□□□□ -1.76
SDC3O75056 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.08□□□□□ -1.76
SDC3O75056 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.08□□□□□ -1.76
SDC3O75056 RPL23AP97-201ENST00000568955 471 ntBASIC4.08□□□□□ -1.76
SDC3O75056 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.08□□□□□ -1.76
SDC3O75056 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.08□□□□□ -1.76
SDC3O75056 AC069304.3-201ENST00000603938 1084 ntBASIC4.08□□□□□ -1.76
SDC3O75056 AC079610.2-201ENST00000604818 690 ntBASIC4.08□□□□□ -1.76
SDC3O75056 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SDC3O75056 RMST_9.1-201ENST00000619945 193 ntBASIC4.08□□□□□ -1.76
SDC3O75056 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.08□□□□□ -1.76
SDC3O75056 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.08□□□□□ -1.76
SDC3O75056 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
SDC3O75056 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.08□□□□□ -1.76
SDC3O75056 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.08□□□□□ -1.76
SDC3O75056 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SDC3O75056 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SDC3O75056 AC007529.1-201ENST00000418574 2178 ntBASIC4.07□□□□□ -1.76
SDC3O75056 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.07□□□□□ -1.76
SDC3O75056 MTND5P11-201ENST00000511037 1812 ntBASIC4.07□□□□□ -1.76
SDC3O75056 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.07□□□□□ -1.76
SDC3O75056 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
SDC3O75056 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SDC3O75056 METTL21EP-201ENST00000298105 713 ntBASIC4.07□□□□□ -1.76
SDC3O75056 RNA5SP52-201ENST00000362448 134 ntBASIC4.07□□□□□ -1.76
SDC3O75056 Y_RNA.110-201ENST00000363220 99 ntBASIC4.07□□□□□ -1.76
SDC3O75056 RNU6-650P-201ENST00000365658 111 ntBASIC4.07□□□□□ -1.76
SDC3O75056 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
SDC3O75056 AL078604.1-201ENST00000404609 466 ntBASIC4.07□□□□□ -1.76
SDC3O75056 MIR1303-201ENST00000408625 86 ntBASIC4.07□□□□□ -1.76
SDC3O75056 RN7SKP167-201ENST00000411047 285 ntBASIC4.07□□□□□ -1.76
SDC3O75056 MTND2P15-201ENST00000418575 892 ntBASIC4.07□□□□□ -1.76
SDC3O75056 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.07□□□□□ -1.76
SDC3O75056 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.07□□□□□ -1.76
SDC3O75056 AL691449.1-201ENST00000426570 421 ntBASIC4.07□□□□□ -1.76
SDC3O75056 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SDC3O75056 PTP4A1P3-201ENST00000433661 420 ntBASIC4.07□□□□□ -1.76
SDC3O75056 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.07□□□□□ -1.76
SDC3O75056 RPS27P5-201ENST00000444247 244 ntBASIC4.07□□□□□ -1.76
SDC3O75056 RPS27AP15-201ENST00000447672 466 ntBASIC4.07□□□□□ -1.76
SDC3O75056 RPL23AP65-201ENST00000475608 468 ntBASIC4.07□□□□□ -1.76
SDC3O75056 AC110792.1-201ENST00000491826 472 ntBASIC4.07□□□□□ -1.76
SDC3O75056 AC104164.2-201ENST00000496953 495 ntBASIC4.07□□□□□ -1.76
SDC3O75056 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.07□□□□□ -1.76
SDC3O75056 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.07□□□□□ -1.76
SDC3O75056 IGLVIV-66-1-201ENST00000521832 460 ntBASIC4.07□□□□□ -1.76
SDC3O75056 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.07□□□□□ -1.76
SDC3O75056 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.07□□□□□ -1.76
SDC3O75056 AP003049.1-201ENST00000529418 457 ntBASIC4.07□□□□□ -1.76
SDC3O75056 DEFB109D-201ENST00000529497 240 ntBASIC4.07□□□□□ -1.76
SDC3O75056 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.07□□□□□ -1.76
SDC3O75056 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.07□□□□□ -1.76
SDC3O75056 AL161713.1-201ENST00000555538 145 ntBASIC4.07□□□□□ -1.76
SDC3O75056 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.07□□□□□ -1.76
SDC3O75056 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.07□□□□□ -1.76
SDC3O75056 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.07□□□□□ -1.76
SDC3O75056 AC092474.3-201ENST00000603022 568 ntBASIC4.07□□□□□ -1.76
SDC3O75056 ABI1P1-201ENST00000603375 1120 ntBASIC4.07□□□□□ -1.76
SDC3O75056 AC079880.2-201ENST00000603790 1213 ntBASIC4.07□□□□□ -1.76
SDC3O75056 AC010680.3-201ENST00000604215 520 ntBASIC4.07□□□□□ -1.76
SDC3O75056 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.07□□□□□ -1.76
SDC3O75056 AL512506.1-201ENST00000613918 449 ntBASIC4.07□□□□□ -1.76
SDC3O75056 AC097460.3-201ENST00000623099 442 ntBASIC4.07□□□□□ -1.76
SDC3O75056 ATE1-AS1-202ENST00000636460 506 ntBASIC4.07□□□□□ -1.76
SDC3O75056 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.07□□□□□ -1.76
SDC3O75056 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SDC3O75056 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.07□□□□□ -1.76
SDC3O75056 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SDC3O75056 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
SDC3O75056 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
SDC3O75056 AC116667.1-201ENST00000604855 2072 ntBASIC4.07□□□□□ -1.76
SDC3O75056 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SDC3O75056 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
SDC3O75056 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
SDC3O75056 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
SDC3O75056 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SDC3O75056 CASC19-261ENST00000641853 1638 ntBASIC4.06□□□□□ -1.76
SDC3O75056 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.06□□□□□ -1.76
SDC3O75056 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.06□□□□□ -1.76
SDC3O75056 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
SDC3O75056 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
SDC3O75056 RNU6-792P-201ENST00000363490 107 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms