Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 LINC02209-201ENST00000521245 2651 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
MSH5O43196 GPD2-203ENST00000409674 2397 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
MSH5O43196 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
MSH5O43196 PDE6A-204ENST00000613228 5398 ntTSL 5 BASIC10.74□□□□□ -0.69
MSH5O43196 SHROOM4-203ENST00000460112 8919 ntTSL 5 BASIC10.74□□□□□ -0.69
MSH5O43196 PLEKHG4B-201ENST00000283426 11515 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
MSH5O43196 ZC3H11A-203ENST00000367212 3004 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
MSH5O43196 ZNF20-201ENST00000334213 3061 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
MSH5O43196 LIMCH1-218ENST00000513024 5129 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
MSH5O43196 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC10.73□□□□□ -0.69
MSH5O43196 GUCY2GP-201ENST00000479705 3222 ntBASIC10.73□□□□□ -0.69
MSH5O43196 CASC15-203ENST00000605917 4461 ntBASIC10.73□□□□□ -0.69
MSH5O43196 MASP1-205ENST00000392472 3900 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
MSH5O43196 LINC00837-201ENST00000443246 3991 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
MSH5O43196 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC10.73□□□□□ -0.69
MSH5O43196 AL079307.1-201ENST00000553312 5982 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
MSH5O43196 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
MSH5O43196 PCDH15-233ENST00000621708 5700 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
MSH5O43196 HIST1H4F-201ENST00000244537 312 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
MSH5O43196 MRAP-202ENST00000339944 440 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
MSH5O43196 Y_RNA.163-201ENST00000363702 113 ntBASIC10.73□□□□□ -0.69
MSH5O43196 RNU6-741P-201ENST00000383889 107 ntBASIC10.73□□□□□ -0.69
MSH5O43196 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC10.73□□□□□ -0.69
MSH5O43196 PTMAP6-201ENST00000439110 327 ntBASIC10.73□□□□□ -0.69
MSH5O43196 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC10.73□□□□□ -0.69
MSH5O43196 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC10.73□□□□□ -0.69
MSH5O43196 FAM26E-201ENST00000368599 9784 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
MSH5O43196 EML5-201ENST00000380664 5910 ntTSL 5 BASIC10.73□□□□□ -0.69
MSH5O43196 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
MSH5O43196 WDHD1-202ENST00000420358 3722 ntTSL 5 BASIC10.73□□□□□ -0.69
MSH5O43196 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
MSH5O43196 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
MSH5O43196 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
MSH5O43196 TMEM59-204ENST00000371344 2473 ntTSL 2 BASIC10.73□□□□□ -0.69
MSH5O43196 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
MSH5O43196 SCML1-203ENST00000380045 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
MSH5O43196 KLHL32-202ENST00000369261 3698 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
MSH5O43196 KCNMA1-248ENST00000638991 11990 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
MSH5O43196 ZNF512-203ENST00000413371 3703 ntTSL 2 BASIC10.72□□□□□ -0.69
MSH5O43196 AL591543.1-202ENST00000642095 4149 ntBASIC10.72□□□□□ -0.69
MSH5O43196 SLC1A2-201ENST00000278379 11696 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
MSH5O43196 EIF4E3-204ENST00000425534 9949 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
MSH5O43196 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
MSH5O43196 PTPRK-206ENST00000368215 4651 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
MSH5O43196 HTR2A-201ENST00000378688 4835 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
MSH5O43196 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
MSH5O43196 RNU6-879P-201ENST00000364328 108 ntBASIC10.72□□□□□ -0.69
MSH5O43196 PHBP1-201ENST00000392260 808 ntBASIC10.72□□□□□ -0.69
MSH5O43196 AL590290.1-201ENST00000405336 380 ntBASIC10.72□□□□□ -0.69
MSH5O43196 RNU6ATAC18P-201ENST00000408413 101 ntBASIC10.72□□□□□ -0.69
MSH5O43196 SNORD12B-201ENST00000410433 91 ntBASIC10.72□□□□□ -0.69
MSH5O43196 CRIP1P3-201ENST00000416794 220 ntBASIC10.72□□□□□ -0.69
MSH5O43196 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC10.72□□□□□ -0.69
MSH5O43196 AC016700.2-201ENST00000446011 156 ntBASIC10.72□□□□□ -0.69
MSH5O43196 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC10.72□□□□□ -0.69
MSH5O43196 AC007000.1-201ENST00000453064 794 ntBASIC10.72□□□□□ -0.69
MSH5O43196 RPL10P6-201ENST00000457497 318 ntBASIC10.72□□□□□ -0.69
MSH5O43196 SSU72P8-201ENST00000473520 585 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
MSH5O43196 RPL26P26-201ENST00000480251 434 ntBASIC10.72□□□□□ -0.69
MSH5O43196 RPL7AP10-201ENST00000481016 791 ntBASIC10.72□□□□□ -0.69
MSH5O43196 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC10.72□□□□□ -0.69
MSH5O43196 RNA5SP75-201ENST00000516841 111 ntBASIC10.72□□□□□ -0.69
MSH5O43196 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
MSH5O43196 TMEM132D-AS1-206ENST00000541320 440 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
MSH5O43196 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC10.72□□□□□ -0.69
MSH5O43196 TMEM132D-AS1-207ENST00000542535 442 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
MSH5O43196 HMGB1P14-201ENST00000557424 591 ntBASIC10.72□□□□□ -0.69
MSH5O43196 RN7SL785P-201ENST00000578437 253 ntBASIC10.72□□□□□ -0.69
MSH5O43196 TBC1D29-204ENST00000584297 602 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
MSH5O43196 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC10.72□□□□□ -0.69
MSH5O43196 MRAS-211ENST00000621127 3801 ntTSL 5 BASIC10.72□□□□□ -0.69
MSH5O43196 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC10.72□□□□□ -0.69
MSH5O43196 AC073488.7-201ENST00000633785 778 ntBASIC10.72□□□□□ -0.69
MSH5O43196 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
MSH5O43196 EIF4BP2-201ENST00000416702 1794 ntBASIC10.72□□□□□ -0.69
MSH5O43196 KLHL32-205ENST00000539200 3600 ntTSL 2 BASIC10.72□□□□□ -0.69
MSH5O43196 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC10.72□□□□□ -0.69
MSH5O43196 GIGYF2-201ENST00000373563 5847 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
MSH5O43196 INPP5B-205ENST00000373027 3905 ntTSL 2 BASIC10.72□□□□□ -0.69
MSH5O43196 GOSR2-232ENST00000640051 3964 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
MSH5O43196 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC10.72□□□□□ -0.69
MSH5O43196 MARK3-203ENST00000335102 2331 ntTSL 5 BASIC10.72□□□□□ -0.69
MSH5O43196 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC10.72□□□□□ -0.69
MSH5O43196 SVEP1-203ENST00000401783 12350 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
MSH5O43196 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
MSH5O43196 ADA2-202ENST00000330232 3195 ntTSL 2 BASIC10.71□□□□□ -0.69
MSH5O43196 PIGA-201ENST00000333590 3652 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
MSH5O43196 RNA5SP442-201ENST00000365050 107 ntBASIC10.71□□□□□ -0.69
MSH5O43196 CENPW-201ENST00000368325 528 ntTSL 3 BASIC10.71□□□□□ -0.69
MSH5O43196 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
MSH5O43196 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC10.71□□□□□ -0.69
MSH5O43196 SIRPB1-205ENST00000381605 3241 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
MSH5O43196 DAZ4-203ENST00000382432 2405 ntTSL 5 BASIC10.71□□□□□ -0.69
MSH5O43196 DAZ2-205ENST00000382433 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
MSH5O43196 MTPN-201ENST00000393085 3738 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
MSH5O43196 H2AFZP3-201ENST00000394213 387 ntBASIC10.71□□□□□ -0.69
MSH5O43196 RPL7AP14-201ENST00000424041 802 ntBASIC10.71□□□□□ -0.69
MSH5O43196 ZMIZ1-AS1-201ENST00000428862 2851 ntTSL 5 BASIC10.71□□□□□ -0.69
MSH5O43196 RN7SL282P-201ENST00000479676 297 ntBASIC10.71□□□□□ -0.69
MSH5O43196 VN1R105P-201ENST00000486595 910 ntBASIC10.71□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 152.9 ms