Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC022893.3-201ENST00000607665 437 ntBASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 AL442067.1-201ENST00000613261 223 ntBASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 MIR4302-201ENST00000638058 60 ntBASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 OR52H1-202ENST00000641796 1061 ntBASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 SALL4P7-201ENST00000555779 3120 ntBASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 TATDN2P3-201ENST00000452855 3665 ntBASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC6.96□□□□□ -1.3
LIMD1Q9UGP4 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 SMG1P5-202ENST00000529428 4219 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 SMG1P2-201ENST00000566127 4221 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 Y_RNA.158-201ENST00000363651 101 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 Y_RNA.482-201ENST00000384377 111 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 AC016769.2-201ENST00000414815 475 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 AC008753.1-201ENST00000423096 284 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 HNRNPA3P4-201ENST00000427514 803 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 ZDHHC20P1-204ENST00000435787 423 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 RPL21P89-201ENST00000444021 467 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 RPL23AP64-201ENST00000469465 435 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 RN7SL187P-201ENST00000495587 303 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 AL139099.1-201ENST00000497398 403 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 SCARNA21.2-201ENST00000516600 166 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 HMGB1P19-201ENST00000517578 577 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 HMGB1P41-201ENST00000520234 440 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 U4.1-201ENST00000620349 87 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 SNX18P12-201ENST00000624821 759 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 SFTPD-AS1-201ENST00000608229 5001 ntBASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 TANK-205ENST00000405852 2155 ntTSL 5 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
LIMD1Q9UGP4 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 MTND4P1-201ENST00000457501 1466 ntBASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 SNORA51.1-201ENST00000363243 140 ntBASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 RNU6-179P-201ENST00000363350 107 ntBASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 MIR568-201ENST00000385036 95 ntBASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 AL121834.1-202ENST00000404494 277 ntBASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 RN7SKP206-201ENST00000410823 293 ntBASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 RNU6-954P-201ENST00000411355 107 ntBASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 RNU6-1304P-201ENST00000411374 106 ntBASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 AL035422.1-201ENST00000414193 397 ntBASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 AC009965.2-201ENST00000425328 970 ntBASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 AL031736.2-201ENST00000426573 787 ntBASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 AL354707.3-201ENST00000427308 331 ntBASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 HMGB3P11-201ENST00000440127 604 ntBASIC6.94□□□□□ -1.3
LIMD1Q9UGP4 RAC1P7-201ENST00000445367 377 ntBASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms