Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC068769.1-201ENST00000474767 2426 ntBASIC5.58□□□□□ -1.52
RNF4P78317 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 LINC00622-201ENST00000562811 1570 ntBASIC5.58□□□□□ -1.52
RNF4P78317 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 AP000473.2-201ENST00000602659 1537 ntBASIC5.58□□□□□ -1.52
RNF4P78317 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.58□□□□□ -1.52
RNF4P78317 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 KPNA2P2-201ENST00000419546 1489 ntBASIC5.58□□□□□ -1.52
RNF4P78317 NMD3P1-201ENST00000439704 1488 ntBASIC5.58□□□□□ -1.52
RNF4P78317 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
RNF4P78317 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.57□□□□□ -1.52
RNF4P78317 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.57□□□□□ -1.52
RNF4P78317 AC107081.3-201ENST00000612715 2034 ntBASIC5.57□□□□□ -1.52
RNF4P78317 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
RNF4P78317 AC004656.1-201ENST00000568479 4951 ntBASIC5.57□□□□□ -1.52
RNF4P78317 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
RNF4P78317 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.57□□□□□ -1.52
RNF4P78317 RNU5E-1-201ENST00000362477 120 ntBASIC5.57□□□□□ -1.52
RNF4P78317 RNU6-451P-201ENST00000362921 107 ntBASIC5.57□□□□□ -1.52
RNF4P78317 RNU6-853P-201ENST00000364306 107 ntBASIC5.57□□□□□ -1.52
RNF4P78317 RNU6-1322P-201ENST00000364309 107 ntBASIC5.57□□□□□ -1.52
RNF4P78317 RNU6-744P-201ENST00000365557 107 ntBASIC5.57□□□□□ -1.52
RNF4P78317 RNU6-1316P-201ENST00000384242 108 ntBASIC5.57□□□□□ -1.52
RNF4P78317 RNU6-878P-201ENST00000384578 110 ntBASIC5.57□□□□□ -1.52
RNF4P78317 AL360271.1-201ENST00000395679 510 ntBASIC5.57□□□□□ -1.52
RNF4P78317 ARF4P3-201ENST00000397387 509 ntBASIC5.57□□□□□ -1.52
RNF4P78317 DSTNP4-201ENST00000399472 474 ntBASIC5.57□□□□□ -1.52
RNF4P78317 MIR1282-201ENST00000408865 101 ntBASIC5.57□□□□□ -1.52
RNF4P78317 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.57□□□□□ -1.52
RNF4P78317 RSU1P3-201ENST00000412878 835 ntBASIC5.57□□□□□ -1.52
RNF4P78317 RPL35AP3-201ENST00000414680 288 ntBASIC5.57□□□□□ -1.52
RNF4P78317 SNRPEP10-201ENST00000420249 274 ntBASIC5.57□□□□□ -1.52
RNF4P78317 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.57□□□□□ -1.52
RNF4P78317 AC019097.1-201ENST00000424783 735 ntBASIC5.57□□□□□ -1.52
RNF4P78317 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
RNF4P78317 AC016027.5-201ENST00000427227 210 ntBASIC5.57□□□□□ -1.52
RNF4P78317 AL035410.1-201ENST00000427409 427 ntBASIC5.57□□□□□ -1.52
RNF4P78317 RPL36P19-201ENST00000430744 301 ntBASIC5.57□□□□□ -1.52
RNF4P78317 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC5.57□□□□□ -1.52
RNF4P78317 EIF5AP4-201ENST00000441206 465 ntBASIC5.57□□□□□ -1.52
RNF4P78317 RPL7P15-201ENST00000461190 712 ntBASIC5.57□□□□□ -1.52
RNF4P78317 RN7SL269P-201ENST00000467795 305 ntBASIC5.57□□□□□ -1.52
RNF4P78317 AC008629.2-201ENST00000503783 483 ntBASIC5.57□□□□□ -1.52
RNF4P78317 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC5.57□□□□□ -1.52
RNF4P78317 AC111000.3-201ENST00000508057 576 ntBASIC5.57□□□□□ -1.52
RNF4P78317 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.57□□□□□ -1.52
RNF4P78317 SCARNA18.1-201ENST00000516330 83 ntBASIC5.57□□□□□ -1.52
RNF4P78317 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.57□□□□□ -1.52
RNF4P78317 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC5.57□□□□□ -1.52
RNF4P78317 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC5.57□□□□□ -1.52
RNF4P78317 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.57□□□□□ -1.52
RNF4P78317 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
RNF4P78317 AC022832.1-201ENST00000530718 645 ntBASIC5.57□□□□□ -1.52
RNF4P78317 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.57□□□□□ -1.52
RNF4P78317 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC5.57□□□□□ -1.52
RNF4P78317 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC5.57□□□□□ -1.52
RNF4P78317 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC5.57□□□□□ -1.52
RNF4P78317 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.57□□□□□ -1.52
RNF4P78317 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC5.57□□□□□ -1.52
RNF4P78317 ACTR3BP1-201ENST00000605584 1247 ntBASIC5.57□□□□□ -1.52
RNF4P78317 MIR6809-201ENST00000612189 116 ntBASIC5.57□□□□□ -1.52
RNF4P78317 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC5.57□□□□□ -1.52
RNF4P78317 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC5.57□□□□□ -1.52
RNF4P78317 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
RNF4P78317 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.57□□□□□ -1.52
RNF4P78317 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
RNF4P78317 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC5.57□□□□□ -1.52
RNF4P78317 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.57□□□□□ -1.52
RNF4P78317 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
RNF4P78317 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
RNF4P78317 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
RNF4P78317 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
RNF4P78317 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.57□□□□□ -1.52
RNF4P78317 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.57□□□□□ -1.52
RNF4P78317 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
RNF4P78317 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
RNF4P78317 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.57□□□□□ -1.52
RNF4P78317 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
RNF4P78317 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
RNF4P78317 AL157700.1-201ENST00000561973 1432 ntBASIC5.57□□□□□ -1.52
RNF4P78317 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
RNF4P78317 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
RNF4P78317 CREM-203ENST00000344351 1625 ntTSL 2 BASIC5.56□□□□□ -1.52
RNF4P78317 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
RNF4P78317 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
RNF4P78317 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
RNF4P78317 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.56□□□□□ -1.52
RNF4P78317 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
RNF4P78317 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
RNF4P78317 AC108467.2-201ENST00000617640 1597 ntBASIC5.56□□□□□ -1.52
RNF4P78317 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
RNF4P78317 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
RNF4P78317 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
RNF4P78317 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
RNF4P78317 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.56□□□□□ -1.52
RNF4P78317 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
RNF4P78317 RNA5SP273-201ENST00000362484 113 ntBASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 180.7 ms