Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AC008432.1-201ENST00000615912 1320 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 AC017007.4-201ENST00000503353 1352 ntBASIC4.09□□□□□ -1.75
LHX3Q9UBR4 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
LHX3Q9UBR4 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
LHX3Q9UBR4 AC134882.1-201ENST00000603738 1676 ntBASIC4.09□□□□□ -1.76
LHX3Q9UBR4 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
LHX3Q9UBR4 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.76
LHX3Q9UBR4 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
LHX3Q9UBR4 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
LHX3Q9UBR4 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.09□□□□□ -1.76
LHX3Q9UBR4 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.09□□□□□ -1.76
LHX3Q9UBR4 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.09□□□□□ -1.76
LHX3Q9UBR4 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 HMGB3P19-201ENST00000403971 560 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 EIF4EP1-201ENST00000422311 642 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AL691449.1-201ENST00000426570 421 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 GSTA7P-201ENST00000438425 448 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 RPL7P55-201ENST00000450522 746 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC023050.1-201ENST00000498198 304 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 OR5M7P-201ENST00000526140 972 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC027104.1-201ENST00000563702 681 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC022968.1-201ENST00000567372 442 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC106734.1-201ENST00000568646 663 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC104662.1-201ENST00000604448 511 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AL008729.2-201ENST00000606393 473 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AL353600.1-201ENST00000608148 251 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 RMST_10.1-201ENST00000616309 154 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC011266.1-201ENST00000624119 3569 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AL596275.2-204ENST00000641628 552 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AL596275.2-206ENST00000641957 626 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.08□□□□□ -1.76
LHX3Q9UBR4 AC022031.1-201ENST00000585985 2593 ntBASIC4.08□□□□□ -1.76
LHX3Q9UBR4 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 IQCB2P-201ENST00000401788 1633 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 RNA5SP52-201ENST00000362448 134 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 RNA5SP27-201ENST00000363839 119 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 AL606495.1-201ENST00000422100 813 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 AC093422.3-201ENST00000428506 305 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 ELOCP11-201ENST00000436690 332 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 ELOCP16-201ENST00000444494 332 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 RPL6P5-201ENST00000445678 828 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 HMGB3P21-201ENST00000452483 547 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 AC011037.1-201ENST00000483964 558 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 TPT1P3-201ENST00000492841 512 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 AL035404.1-201ENST00000497982 568 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 IGKV2-38-201ENST00000517443 247 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 COX6B1P6-201ENST00000522347 255 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 OR8R1P-201ENST00000543943 764 ntBASIC4.07□□□□□ -1.76
LHX3Q9UBR4 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.07□□□□□ -1.76
LHX3Q9UBR4 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms