Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
RNF4P78317 AC009117.1-201ENST00000563948 554 ntBASIC5.59□□□□□ -1.51
RNF4P78317 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC5.59□□□□□ -1.51
RNF4P78317 AC090651.1-201ENST00000567865 634 ntBASIC5.59□□□□□ -1.51
RNF4P78317 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.59□□□□□ -1.51
RNF4P78317 AC119403.2-201ENST00000590960 598 ntBASIC5.59□□□□□ -1.51
RNF4P78317 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
RNF4P78317 AL136363.1-201ENST00000605349 337 ntBASIC5.59□□□□□ -1.51
RNF4P78317 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC5.59□□□□□ -1.51
RNF4P78317 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
RNF4P78317 AC068722.2-201ENST00000618734 544 ntBASIC5.59□□□□□ -1.51
RNF4P78317 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC5.59□□□□□ -1.51
RNF4P78317 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.59□□□□□ -1.51
RNF4P78317 OR2L1P-202ENST00000641567 1023 ntBASIC5.59□□□□□ -1.51
RNF4P78317 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.59□□□□□ -1.51
RNF4P78317 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.59□□□□□ -1.51
RNF4P78317 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
RNF4P78317 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
RNF4P78317 AC016583.1-201ENST00000624221 2431 ntBASIC5.59□□□□□ -1.51
RNF4P78317 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
RNF4P78317 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
RNF4P78317 ERCC6-202ENST00000374127 1782 ntBASIC5.59□□□□□ -1.51
RNF4P78317 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.59□□□□□ -1.52
RNF4P78317 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
RNF4P78317 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.52
RNF4P78317 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
RNF4P78317 AC012254.3-201ENST00000591183 2117 ntBASIC5.59□□□□□ -1.52
RNF4P78317 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
RNF4P78317 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC5.58□□□□□ -1.52
RNF4P78317 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.58□□□□□ -1.52
RNF4P78317 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.58□□□□□ -1.52
RNF4P78317 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 AC005225.5-201ENST00000623547 2225 ntBASIC5.58□□□□□ -1.52
RNF4P78317 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
RNF4P78317 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 RNY3P3-201ENST00000363816 102 ntBASIC5.58□□□□□ -1.52
RNF4P78317 Y_RNA.481-201ENST00000384373 102 ntBASIC5.58□□□□□ -1.52
RNF4P78317 RPL23AP32-201ENST00000395315 459 ntBASIC5.58□□□□□ -1.52
RNF4P78317 AL031679.1-201ENST00000400616 525 ntBASIC5.58□□□□□ -1.52
RNF4P78317 MRPL42P2-201ENST00000403169 426 ntBASIC5.58□□□□□ -1.52
RNF4P78317 SNRPEP6-201ENST00000407465 277 ntBASIC5.58□□□□□ -1.52
RNF4P78317 AC007390.1-201ENST00000415722 356 ntBASIC5.58□□□□□ -1.52
RNF4P78317 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 GNG5P5-201ENST00000420444 220 ntBASIC5.58□□□□□ -1.52
RNF4P78317 NMD3P2-201ENST00000421815 761 ntBASIC5.58□□□□□ -1.52
RNF4P78317 OR10T1P-201ENST00000424327 947 ntBASIC5.58□□□□□ -1.52
RNF4P78317 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.58□□□□□ -1.52
RNF4P78317 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 CALM1P1-201ENST00000442082 433 ntBASIC5.58□□□□□ -1.52
RNF4P78317 FAM103A2P-201ENST00000444122 354 ntBASIC5.58□□□□□ -1.52
RNF4P78317 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC5.58□□□□□ -1.52
RNF4P78317 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.58□□□□□ -1.52
RNF4P78317 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC5.58□□□□□ -1.52
RNF4P78317 RPL39P36-201ENST00000490784 156 ntBASIC5.58□□□□□ -1.52
RNF4P78317 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.58□□□□□ -1.52
RNF4P78317 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.58□□□□□ -1.52
RNF4P78317 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.58□□□□□ -1.52
RNF4P78317 RNU6-347P-201ENST00000516658 105 ntBASIC5.58□□□□□ -1.52
RNF4P78317 Vault.3-201ENST00000516676 95 ntBASIC5.58□□□□□ -1.52
RNF4P78317 Y_RNA.701-201ENST00000516812 110 ntBASIC5.58□□□□□ -1.52
RNF4P78317 TRIM77BP-201ENST00000524985 1119 ntBASIC5.58□□□□□ -1.52
RNF4P78317 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.58□□□□□ -1.52
RNF4P78317 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.58□□□□□ -1.52
RNF4P78317 CYCSP28-201ENST00000534284 321 ntBASIC5.58□□□□□ -1.52
RNF4P78317 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.58□□□□□ -1.52
RNF4P78317 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 AC007494.1-201ENST00000562293 760 ntBASIC5.58□□□□□ -1.52
RNF4P78317 AC034105.3-201ENST00000565294 442 ntBASIC5.58□□□□□ -1.52
RNF4P78317 TXNP4-201ENST00000575018 310 ntBASIC5.58□□□□□ -1.52
RNF4P78317 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 AC009233.1-201ENST00000616477 371 ntBASIC5.58□□□□□ -1.52
RNF4P78317 AC006504.8-201ENST00000621046 635 ntBASIC5.58□□□□□ -1.52
RNF4P78317 YWHAEP7-203ENST00000622054 312 ntBASIC5.58□□□□□ -1.52
RNF4P78317 FRG1KP-201ENST00000623592 341 ntBASIC5.58□□□□□ -1.52
RNF4P78317 VPS8-228ENST00000628962 207 ntTSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 DNM1P47-203ENST00000571780 12667 ntBASIC5.58□□□□□ -1.52
RNF4P78317 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.58□□□□□ -1.52
RNF4P78317 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
RNF4P78317 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms