Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC125336.1-201ENST00000508893 2827 ntBASIC5.16□□□□□ -1.58
HOXC9P31274 SAMMSON-213ENST00000641336 1521 ntBASIC5.16□□□□□ -1.58
HOXC9P31274 MTND4P9-201ENST00000507819 1346 ntBASIC5.16□□□□□ -1.58
HOXC9P31274 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXC9P31274 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
HOXC9P31274 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXC9P31274 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXC9P31274 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HOXC9P31274 SYF2-202ENST00000354361 926 ntTSL 2 BASIC5.15□□□□□ -1.59
HOXC9P31274 RNU4-27P-201ENST00000410889 139 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC5.15□□□□□ -1.59
HOXC9P31274 PDSS1P1-201ENST00000422953 1114 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC5.15□□□□□ -1.59
HOXC9P31274 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.15□□□□□ -1.59
HOXC9P31274 HMGB1P37-201ENST00000439613 609 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 AL157827.1-201ENST00000447622 132 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 HNRNPDLP3-201ENST00000456745 380 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC5.15□□□□□ -1.59
HOXC9P31274 DUXAP2-201ENST00000519198 589 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 AC022695.1-201ENST00000522089 237 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 AP000859.1-201ENST00000525536 307 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HOXC9P31274 AC025918.2-201ENST00000558683 763 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC5.15□□□□□ -1.59
HOXC9P31274 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC5.15□□□□□ -1.59
HOXC9P31274 AC084373.1-201ENST00000603311 235 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC5.15□□□□□ -1.59
HOXC9P31274 AC084757.4-201ENST00000616350 526 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 AC016957.2-201ENST00000616998 848 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 AC015967.1-201ENST00000619893 476 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 AL049777.1-201ENST00000622740 518 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 AL773545.4-201ENST00000637262 310 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 AL513478.4-201ENST00000641636 310 ntBASIC5.15□□□□□ -1.59
HOXC9P31274 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
HOXC9P31274 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.15□□□□□ -1.59
HOXC9P31274 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
HOXC9P31274 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HOXC9P31274 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.59
HOXC9P31274 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HOXC9P31274 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXC9P31274 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.14□□□□□ -1.59
HOXC9P31274 MIR183-201ENST00000384958 110 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 RNU6-1320P-201ENST00000390838 107 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 RNU6-1269P-201ENST00000391139 107 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 SOD2P1-201ENST00000396543 562 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 STAT4-203ENST00000409995 709 ntTSL 5 BASIC5.14□□□□□ -1.59
HOXC9P31274 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC5.14□□□□□ -1.59
HOXC9P31274 TATDN1P1-201ENST00000414123 891 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXC9P31274 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXC9P31274 HLA-N-201ENST00000437516 135 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC5.14□□□□□ -1.59
HOXC9P31274 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5.14□□□□□ -1.59
HOXC9P31274 RNU6-599P-201ENST00000459383 107 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 RNU6-1193P-201ENST00000459461 107 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 AC018635.1-201ENST00000468292 1030 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXC9P31274 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC5.14□□□□□ -1.59
HOXC9P31274 IGKV2-38-201ENST00000517443 247 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC5.14□□□□□ -1.59
HOXC9P31274 CBX3P2-202ENST00000583365 535 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 OR1AB1P-201ENST00000585564 761 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXC9P31274 AC011458.1-201ENST00000604034 617 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 AC018926.1-201ENST00000616335 435 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 RNU6-368P-201ENST00000620928 107 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 RNU6-538P-201ENST00000622329 107 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 RPL23AP61-201ENST00000623642 466 ntBASIC5.14□□□□□ -1.59
HOXC9P31274 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC5.14□□□□□ -1.59
HOXC9P31274 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC5.14□□□□□ -1.59
HOXC9P31274 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXC9P31274 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
HOXC9P31274 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXC9P31274 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
HOXC9P31274 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
HOXC9P31274 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXC9P31274 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXC9P31274 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXC9P31274 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXC9P31274 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXC9P31274 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXC9P31274 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXC9P31274 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXC9P31274 RNA5SP51-201ENST00000364750 119 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 MT-TP-201ENST00000387461 68 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 RPL7P60-201ENST00000397636 735 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 AL035405.1-201ENST00000400795 710 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 AL121878.1-201ENST00000418638 859 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXC9P31274 AL512637.2-201ENST00000431287 1256 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 BX119904.1-201ENST00000432026 348 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXC9P31274 SYT14P1-201ENST00000481459 721 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXC9P31274 AC106707.2-201ENST00000484182 374 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 AC110768.1-201ENST00000509222 400 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 AC021146.3-201ENST00000511911 260 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXC9P31274 AC112198.4-201ENST00000515450 351 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms