Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.89□□□□□ -1.63
BDNFP23560 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.89□□□□□ -1.63
BDNFP23560 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.89□□□□□ -1.63
BDNFP23560 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.89□□□□□ -1.63
BDNFP23560 DPRXP5-201ENST00000604662 539 ntBASIC4.89□□□□□ -1.63
BDNFP23560 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.89□□□□□ -1.63
BDNFP23560 AC005156.1-201ENST00000613371 573 ntBASIC4.89□□□□□ -1.63
BDNFP23560 uc_338.32-201ENST00000615087 172 ntBASIC4.89□□□□□ -1.63
BDNFP23560 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.89□□□□□ -1.63
BDNFP23560 AL121594.5-201ENST00000631724 573 ntBASIC4.89□□□□□ -1.63
BDNFP23560 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.89□□□□□ -1.63
BDNFP23560 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
BDNFP23560 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
BDNFP23560 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
BDNFP23560 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
BDNFP23560 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
BDNFP23560 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.89□□□□□ -1.63
BDNFP23560 IQCB2P-201ENST00000401788 1633 ntBASIC4.89□□□□□ -1.63
BDNFP23560 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.89□□□□□ -1.63
BDNFP23560 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.89□□□□□ -1.63
BDNFP23560 AL359922.3-201ENST00000624779 1670 ntBASIC4.89□□□□□ -1.63
BDNFP23560 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.89□□□□□ -1.63
BDNFP23560 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
BDNFP23560 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.88□□□□□ -1.63
BDNFP23560 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
BDNFP23560 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
BDNFP23560 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
BDNFP23560 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.88□□□□□ -1.63
BDNFP23560 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
BDNFP23560 AL592494.2-201ENST00000425455 1548 ntBASIC4.88□□□□□ -1.63
BDNFP23560 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
BDNFP23560 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
BDNFP23560 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
BDNFP23560 SNORA7.2-201ENST00000364446 145 ntBASIC4.88□□□□□ -1.63
BDNFP23560 RNU6-619P-201ENST00000365146 108 ntBASIC4.88□□□□□ -1.63
BDNFP23560 MIR649-201ENST00000384843 97 ntBASIC4.88□□□□□ -1.63
BDNFP23560 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.88□□□□□ -1.63
BDNFP23560 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
BDNFP23560 RPL22P22-201ENST00000395439 379 ntBASIC4.88□□□□□ -1.63
BDNFP23560 GSTA8P-201ENST00000404253 637 ntBASIC4.88□□□□□ -1.63
BDNFP23560 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC4.88□□□□□ -1.63
BDNFP23560 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.88□□□□□ -1.63
BDNFP23560 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.88□□□□□ -1.63
BDNFP23560 RPL7P53-201ENST00000421245 739 ntBASIC4.88□□□□□ -1.63
BDNFP23560 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.88□□□□□ -1.63
BDNFP23560 RPP40P1-201ENST00000426762 456 ntBASIC4.88□□□□□ -1.63
BDNFP23560 CNOT7P1-201ENST00000429006 852 ntBASIC4.88□□□□□ -1.63
BDNFP23560 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.88□□□□□ -1.63
BDNFP23560 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC4.88□□□□□ -1.63
BDNFP23560 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
BDNFP23560 AL162591.2-201ENST00000449634 317 ntBASIC4.88□□□□□ -1.63
BDNFP23560 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.88□□□□□ -1.63
BDNFP23560 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.88□□□□□ -1.63
BDNFP23560 MTND2P28-201ENST00000457540 1044 ntBASIC4.88□□□□□ -1.63
BDNFP23560 RNU7-140P-201ENST00000459546 60 ntBASIC4.88□□□□□ -1.63
BDNFP23560 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.88□□□□□ -1.63
BDNFP23560 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
BDNFP23560 AC026414.1-201ENST00000504046 698 ntBASIC4.88□□□□□ -1.63
BDNFP23560 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
BDNFP23560 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.88□□□□□ -1.63
BDNFP23560 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC4.88□□□□□ -1.63
BDNFP23560 AP003385.6-201ENST00000531603 374 ntBASIC4.88□□□□□ -1.63
BDNFP23560 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.88□□□□□ -1.63
BDNFP23560 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC4.88□□□□□ -1.63
BDNFP23560 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC4.88□□□□□ -1.63
BDNFP23560 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.88□□□□□ -1.63
BDNFP23560 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.88□□□□□ -1.63
BDNFP23560 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.88□□□□□ -1.63
BDNFP23560 VN1R87P-201ENST00000596706 487 ntBASIC4.88□□□□□ -1.63
BDNFP23560 AC007687.1-201ENST00000602704 304 ntBASIC4.88□□□□□ -1.63
BDNFP23560 BNIP3P19-201ENST00000605397 577 ntBASIC4.88□□□□□ -1.63
BDNFP23560 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.88□□□□□ -1.63
BDNFP23560 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.88□□□□□ -1.63
BDNFP23560 AC006927.2-201ENST00000639256 389 ntBASIC4.88□□□□□ -1.63
BDNFP23560 BX649567.1-201ENST00000642071 1134 ntBASIC4.88□□□□□ -1.63
BDNFP23560 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.88□□□□□ -1.63
BDNFP23560 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
BDNFP23560 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
BDNFP23560 AC087190.4-201ENST00000574616 8334 ntBASIC4.88□□□□□ -1.63
BDNFP23560 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
BDNFP23560 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
BDNFP23560 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
BDNFP23560 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.88□□□□□ -1.63
BDNFP23560 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
BDNFP23560 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
BDNFP23560 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
BDNFP23560 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
BDNFP23560 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
BDNFP23560 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
BDNFP23560 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
BDNFP23560 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
BDNFP23560 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
BDNFP23560 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
BDNFP23560 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
BDNFP23560 RNU6-353P-201ENST00000364266 108 ntBASIC4.87□□□□□ -1.63
BDNFP23560 MIR129-1-201ENST00000384972 72 ntBASIC4.87□□□□□ -1.63
BDNFP23560 SNORA40.4-201ENST00000390971 128 ntBASIC4.87□□□□□ -1.63
BDNFP23560 AC114973.1-201ENST00000429057 632 ntBASIC4.87□□□□□ -1.63
BDNFP23560 IFNNP1-201ENST00000429219 553 ntBASIC4.87□□□□□ -1.63
BDNFP23560 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms