Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL390879.2-203ENST00000426943 1121 ntBASIC4.26□□□□□ -1.73
MSH4O15457 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.26□□□□□ -1.73
MSH4O15457 TRIM60P13-201ENST00000432350 1283 ntBASIC4.26□□□□□ -1.73
MSH4O15457 AC099063.2-201ENST00000446360 662 ntBASIC4.26□□□□□ -1.73
MSH4O15457 HMGB3P22-202ENST00000451823 572 ntBASIC4.26□□□□□ -1.73
MSH4O15457 AC010469.1-201ENST00000463864 576 ntBASIC4.26□□□□□ -1.73
MSH4O15457 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.26□□□□□ -1.73
MSH4O15457 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH4O15457 AC108157.1-201ENST00000510511 539 ntBASIC4.26□□□□□ -1.73
MSH4O15457 AC093770.1-201ENST00000511559 571 ntBASIC4.26□□□□□ -1.73
MSH4O15457 RNU6-889P-201ENST00000517189 103 ntBASIC4.26□□□□□ -1.73
MSH4O15457 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH4O15457 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH4O15457 MIR5187-201ENST00000583479 76 ntBASIC4.26□□□□□ -1.73
MSH4O15457 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH4O15457 AC112230.1-201ENST00000604342 547 ntBASIC4.26□□□□□ -1.73
MSH4O15457 AL354760.1-201ENST00000608357 643 ntBASIC4.26□□□□□ -1.73
MSH4O15457 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.26□□□□□ -1.73
MSH4O15457 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.26□□□□□ -1.73
MSH4O15457 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH4O15457 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSH4O15457 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSH4O15457 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.26□□□□□ -1.73
MSH4O15457 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
MSH4O15457 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.25□□□□□ -1.73
MSH4O15457 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.25□□□□□ -1.73
MSH4O15457 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.25□□□□□ -1.73
MSH4O15457 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.25□□□□□ -1.73
MSH4O15457 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
MSH4O15457 OR52B1P-201ENST00000316506 909 ntBASIC4.25□□□□□ -1.73
MSH4O15457 MIR320B1-201ENST00000390209 79 ntBASIC4.25□□□□□ -1.73
MSH4O15457 RPL7P60-201ENST00000397636 735 ntBASIC4.25□□□□□ -1.73
MSH4O15457 TCEA1P2-201ENST00000420496 906 ntBASIC4.25□□□□□ -1.73
MSH4O15457 AL590623.1-201ENST00000427864 105 ntBASIC4.25□□□□□ -1.73
MSH4O15457 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.25□□□□□ -1.73
MSH4O15457 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.25□□□□□ -1.73
MSH4O15457 AL035246.1-201ENST00000433554 1255 ntBASIC4.25□□□□□ -1.73
MSH4O15457 ATP5HP2-201ENST00000433885 485 ntBASIC4.25□□□□□ -1.73
MSH4O15457 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.25□□□□□ -1.73
MSH4O15457 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.25□□□□□ -1.73
MSH4O15457 MTCYBP12-201ENST00000440559 1134 ntBASIC4.25□□□□□ -1.73
MSH4O15457 HMGB3P9-201ENST00000441799 583 ntBASIC4.25□□□□□ -1.73
MSH4O15457 AL354710.1-201ENST00000453641 246 ntBASIC4.25□□□□□ -1.73
MSH4O15457 RPL5P30-201ENST00000465511 891 ntBASIC4.25□□□□□ -1.73
MSH4O15457 ACTR3P3-201ENST00000480448 893 ntBASIC4.25□□□□□ -1.73
MSH4O15457 RPS26P15-201ENST00000488067 348 ntBASIC4.25□□□□□ -1.73
MSH4O15457 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
MSH4O15457 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
MSH4O15457 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.25□□□□□ -1.73
MSH4O15457 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.25□□□□□ -1.73
MSH4O15457 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
MSH4O15457 AC244505.7-201ENST00000599675 272 ntBASIC4.25□□□□□ -1.73
MSH4O15457 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.25□□□□□ -1.73
MSH4O15457 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.25□□□□□ -1.73
MSH4O15457 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
MSH4O15457 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.25□□□□□ -1.73
MSH4O15457 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
MSH4O15457 AC092079.1-201ENST00000558620 1985 ntBASIC4.25□□□□□ -1.73
MSH4O15457 BDP1P-201ENST00000582658 1990 ntBASIC4.25□□□□□ -1.73
MSH4O15457 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
MSH4O15457 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.24□□□□□ -1.73
MSH4O15457 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
MSH4O15457 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
MSH4O15457 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
MSH4O15457 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
MSH4O15457 BX005019.1-201ENST00000561881 1810 ntBASIC4.24□□□□□ -1.73
MSH4O15457 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
MSH4O15457 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
MSH4O15457 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.24□□□□□ -1.73
MSH4O15457 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.24□□□□□ -1.73
MSH4O15457 SNORD3H-201ENST00000384486 214 ntBASIC4.24□□□□□ -1.73
MSH4O15457 RNU6-178P-201ENST00000384631 104 ntBASIC4.24□□□□□ -1.73
MSH4O15457 NPM1P10-201ENST00000398310 865 ntBASIC4.24□□□□□ -1.73
MSH4O15457 HLFP1-201ENST00000402375 499 ntBASIC4.24□□□□□ -1.73
MSH4O15457 NCSTNP1-201ENST00000406229 144 ntBASIC4.24□□□□□ -1.73
MSH4O15457 RNU6ATAC-201ENST00000408749 126 ntBASIC4.24□□□□□ -1.73
MSH4O15457 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.24□□□□□ -1.73
MSH4O15457 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.24□□□□□ -1.73
MSH4O15457 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.24□□□□□ -1.73
MSH4O15457 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.24□□□□□ -1.73
MSH4O15457 RAB9AP3-201ENST00000412737 573 ntBASIC4.24□□□□□ -1.73
MSH4O15457 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.24□□□□□ -1.73
MSH4O15457 AC092647.1-201ENST00000420654 287 ntBASIC4.24□□□□□ -1.73
MSH4O15457 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.24□□□□□ -1.73
MSH4O15457 NANOGP6-201ENST00000429190 847 ntBASIC4.24□□□□□ -1.73
MSH4O15457 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.24□□□□□ -1.73
MSH4O15457 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
MSH4O15457 RAB9AP1-201ENST00000449393 573 ntBASIC4.24□□□□□ -1.73
MSH4O15457 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.24□□□□□ -1.73
MSH4O15457 TRBV12-2-201ENST00000489763 344 ntBASIC4.24□□□□□ -1.73
MSH4O15457 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.24□□□□□ -1.73
MSH4O15457 UBE2CP3-201ENST00000502715 450 ntBASIC4.24□□□□□ -1.73
MSH4O15457 HMGB1P3-201ENST00000502802 616 ntBASIC4.24□□□□□ -1.73
MSH4O15457 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC4.24□□□□□ -1.73
MSH4O15457 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC4.24□□□□□ -1.73
MSH4O15457 NAT2-202ENST00000520116 716 ntTSL 3 BASIC4.24□□□□□ -1.73
MSH4O15457 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.24□□□□□ -1.73
MSH4O15457 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.24□□□□□ -1.73
MSH4O15457 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC4.24□□□□□ -1.73
MSH4O15457 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms