Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 DYNLL1P6-201ENST00000503440 264 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC008494.2-201ENST00000514544 370 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 IGKV2-36-201ENST00000519999 223 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 PTK2-220ENST00000520151 573 ntTSL 4 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC087808.1-201ENST00000520501 361 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 COX6B1P6-201ENST00000522347 255 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC005832.3-201ENST00000537929 631 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC004217.3-201ENST00000551552 878 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 RN7SL435P-201ENST00000584418 282 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 MIR4999-201ENST00000585029 91 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 VN1R90P-201ENST00000595717 726 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AL020997.2-201ENST00000602607 184 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC072039.2-201ENST00000608883 439 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC015726.3-201ENST00000624501 418 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC126323.6-202ENST00000568092 3511 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC022031.1-201ENST00000585985 2593 ntBASIC4.84□□□□□ -1.64
VPS4AQ9UN37 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.84□□□□□ -1.64
VPS4AQ9UN37 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.64
VPS4AQ9UN37 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AL672167.1-205ENST00000641112 3080 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AC119744.1-201ENST00000454746 1715 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 Z98755.1-201ENST00000407015 1384 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 ZNF542P-204ENST00000482727 1305 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 MAPK6PS3-201ENST00000403865 2162 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AL672167.1-204ENST00000641875 3017 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AL391994.1-201ENST00000254724 282 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AL512646.1-201ENST00000269395 1077 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 RNU6-621P-201ENST00000364752 109 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 SNORA2.3-201ENST00000383920 135 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 SNORD116-9-201ENST00000384000 95 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 SNORD116-3-201ENST00000384287 95 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 SNORD116-7-201ENST00000384404 95 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 SNORD116-5-201ENST00000384462 95 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 RPS16P5-201ENST00000406501 404 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 RNU6-757P-201ENST00000410334 100 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 GJA6P-201ENST00000415117 1042 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AL139421.1-201ENST00000423010 169 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 DYNLL1P7-201ENST00000429273 258 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 RPL7P4-203ENST00000430239 730 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 ATP5F1P1-201ENST00000433775 569 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 MTND3P1-201ENST00000441336 220 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 ARL4AP3-201ENST00000441452 574 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 RPL7AP61-201ENST00000443410 636 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 COX6CP18-201ENST00000448769 222 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AL109741.2-201ENST00000455561 343 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 PNPLA4P1-201ENST00000458328 305 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AC007537.2-201ENST00000472093 511 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 RPS3AP43-201ENST00000479743 781 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AC108734.3-201ENST00000481241 1165 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 ACTG1P13-201ENST00000486987 1043 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AC005912.1-201ENST00000495392 255 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AC021146.8-201ENST00000507455 733 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 IGBP1P5-201ENST00000507524 1000 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 RN7SKP260-201ENST00000516907 149 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AL008729.2-201ENST00000606393 473 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AL139418.1-201ENST00000613613 177 ntBASIC4.83□□□□□ -1.64
VPS4AQ9UN37 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS4AQ9UN37 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 328.5 ms