Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AC139103.1-201ENST00000534696 1030 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 NIFKP8-201ENST00000560500 874 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AL583856.2-201ENST00000606298 543 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AC009974.1-201ENST00000608881 455 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AC009237.15-201ENST00000610252 501 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AC022893.2-201ENST00000564832 3296 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 AL355578.1-201ENST00000607405 1328 ntBASIC4.61□□□□□ -1.67
COL28A1Q2UY09 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL28A1Q2UY09 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 RNU6-619P-201ENST00000365146 108 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 SNORA77-201ENST00000408716 125 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 OR51A3P-201ENST00000413596 924 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AL513175.2-201ENST00000422071 443 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 RPS26P47-201ENST00000427219 348 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 PHBP16-201ENST00000446318 950 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 NPM1P13-201ENST00000452663 865 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 NAP1L1P3-201ENST00000462291 880 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 RN7SL441P-201ENST00000492388 296 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AC008885.2-201ENST00000509506 930 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 MTND4LP31-201ENST00000514859 294 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 MIR4298-201ENST00000584380 73 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AP004247.3-201ENST00000608682 624 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AP000238.1-201ENST00000608759 426 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AC099676.1-201ENST00000608886 657 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AC234782.5-201ENST00000617723 324 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AL445567.2-201ENST00000618935 498 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 MIR6075-201ENST00000620782 95 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 AC090897.3-201ENST00000636973 1157 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
COL28A1Q2UY09 OR56B2P-202ENST00000641377 2453 ntBASIC4.6□□□□□ -1.67
COL28A1Q2UY09 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 SNORD46.1-201ENST00000364139 104 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 RNU4-68P-201ENST00000364314 141 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 OR1L1-202ENST00000373686 1083 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 SNORD116-12-201ENST00000384468 92 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 SNORA70.10-201ENST00000384515 134 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 MIR554-201ENST00000384874 96 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL28A1Q2UY09 RN7SKP16-201ENST00000410180 299 ntBASIC4.59□□□□□ -1.67
COL28A1Q2UY09 RN7SKP202-201ENST00000410439 330 ntBASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms