Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 STARP1-201ENST00000397973 869 ntBASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 KRT8P45-201ENST00000414328 1447 ntBASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 ATP5G2P1-201ENST00000433580 426 ntBASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 AC112907.2-201ENST00000448639 330 ntBASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHGA1Q9Y5H4 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.58■□□□□ 0.57
PCDHGA1Q9Y5H4 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PCDHGA1Q9Y5H4 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.58■□□□□ 0.57
PCDHGA1Q9Y5H4 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.58■□□□□ 0.57
PCDHGA1Q9Y5H4 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCDHGA1Q9Y5H4 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
PCDHGA1Q9Y5H4 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.58■□□□□ 0.57
PCDHGA1Q9Y5H4 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.57
PCDHGA1Q9Y5H4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.58■□□□□ 0.57
PCDHGA1Q9Y5H4 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCDHGA1Q9Y5H4 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.58■□□□□ 0.57
PCDHGA1Q9Y5H4 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PCDHGA1Q9Y5H4 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.58■□□□□ 0.56
PCDHGA1Q9Y5H4 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PCDHGA1Q9Y5H4 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.58■□□□□ 0.56
PCDHGA1Q9Y5H4 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.58■□□□□ 0.56
PCDHGA1Q9Y5H4 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.58■□□□□ 0.56
PCDHGA1Q9Y5H4 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.58■□□□□ 0.56
PCDHGA1Q9Y5H4 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCDHGA1Q9Y5H4 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
PCDHGA1Q9Y5H4 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
PCDHGA1Q9Y5H4 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PCDHGA1Q9Y5H4 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCDHGA1Q9Y5H4 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCDHGA1Q9Y5H4 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 AC026310.3-201ENST00000625186 2373 ntBASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 AP001271.2-201ENST00000624018 1556 ntBASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 AC083849.1-201ENST00000615227 514 ntBASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
PCDHGA1Q9Y5H4 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA1Q9Y5H4 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA1Q9Y5H4 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA1Q9Y5H4 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA1Q9Y5H4 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA1Q9Y5H4 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.56■□□□□ 0.56
PCDHGA1Q9Y5H4 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA1Q9Y5H4 KRT8P41-201ENST00000533985 1514 ntBASIC18.56■□□□□ 0.56
PCDHGA1Q9Y5H4 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDHGA1Q9Y5H4 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms