Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHB3Q9Y5E6 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHB3Q9Y5E6 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHB3Q9Y5E6 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 NBPF21P-201ENST00000425093 1451 ntBASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 KRT16P5-201ENST00000455284 522 ntBASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHB3Q9Y5E6 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 AC004408.2-201ENST00000623613 2777 ntBASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHB3Q9Y5E6 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 AC133561.5-201ENST00000635547 218 ntBASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.91■□□□□ 0.62
PCDHB3Q9Y5E6 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 Z82202.1-201ENST00000623446 1880 ntBASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 AC113410.3-201ENST00000623366 203 ntBASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms