Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX4Q9UIU6 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
SIX4Q9UIU6 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SIX4Q9UIU6 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
SIX4Q9UIU6 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 BX088651.1-201ENST00000540551 451 ntBASIC20.72■□□□□ 0.91
SIX4Q9UIU6 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.72■□□□□ 0.91
SIX4Q9UIU6 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 AC093484.2-201ENST00000580996 2166 ntBASIC20.71■□□□□ 0.91
SIX4Q9UIU6 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 AP000692.2-201ENST00000608391 879 ntBASIC20.71■□□□□ 0.91
SIX4Q9UIU6 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX4Q9UIU6 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
SIX4Q9UIU6 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.7■□□□□ 0.9
SIX4Q9UIU6 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX4Q9UIU6 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 UNC93B2-201ENST00000285383 730 ntBASIC20.69■□□□□ 0.9
SIX4Q9UIU6 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 DGCR10-201ENST00000609839 495 ntBASIC20.69■□□□□ 0.9
SIX4Q9UIU6 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 AC007952.6-201ENST00000573168 2673 ntBASIC20.69■□□□□ 0.9
SIX4Q9UIU6 AC003957.1-201ENST00000625108 2673 ntBASIC20.69■□□□□ 0.9
SIX4Q9UIU6 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SIX4Q9UIU6 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms