Protein–RNA interactions for Protein: Q9NRQ5

SMCO4, Single-pass membrane and coiled-coil domain-containing protein 4, humanhuman

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4Q9NRQ5 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 AD000864.1-201ENST00000624076 2295 ntBASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SMCO4Q9NRQ5 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SMCO4Q9NRQ5 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SMCO4Q9NRQ5 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SMCO4Q9NRQ5 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
SMCO4Q9NRQ5 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SMCO4Q9NRQ5 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
SMCO4Q9NRQ5 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
SMCO4Q9NRQ5 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
SMCO4Q9NRQ5 GOLGA2P11-201ENST00000562660 1621 ntBASIC15.21■□□□□ 0.02
SMCO4Q9NRQ5 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 AC009237.14-201ENST00000609975 1594 ntBASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 SPCS2P3-201ENST00000500401 656 ntBASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 AC120024.1-201ENST00000562672 995 ntBASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 SNX5-217ENST00000606557 1087 ntBASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SMCO4Q9NRQ5 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms