Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSU72Q9NP77 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSU72Q9NP77 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSU72Q9NP77 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.2■□□□□ 0.66
SSU72Q9NP77 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSU72Q9NP77 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.2■□□□□ 0.66
SSU72Q9NP77 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.2■□□□□ 0.66
SSU72Q9NP77 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSU72Q9NP77 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSU72Q9NP77 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SSU72Q9NP77 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SSU72Q9NP77 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.2■□□□□ 0.66
SSU72Q9NP77 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSU72Q9NP77 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.2■□□□□ 0.66
SSU72Q9NP77 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSU72Q9NP77 FEM1AP3-201ENST00000403722 1741 ntBASIC19.2■□□□□ 0.66
SSU72Q9NP77 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.19■□□□□ 0.66
SSU72Q9NP77 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SSU72Q9NP77 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.19■□□□□ 0.66
SSU72Q9NP77 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SSU72Q9NP77 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.19■□□□□ 0.66
SSU72Q9NP77 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSU72Q9NP77 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.19■□□□□ 0.66
SSU72Q9NP77 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SSU72Q9NP77 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SSU72Q9NP77 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SSU72Q9NP77 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSU72Q9NP77 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.19■□□□□ 0.66
SSU72Q9NP77 DUX4L16-201ENST00000555130 1264 ntBASIC19.19■□□□□ 0.66
SSU72Q9NP77 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.19■□□□□ 0.66
SSU72Q9NP77 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.19■□□□□ 0.66
SSU72Q9NP77 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SSU72Q9NP77 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.19■□□□□ 0.66
SSU72Q9NP77 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SSU72Q9NP77 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSU72Q9NP77 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSU72Q9NP77 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSU72Q9NP77 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SSU72Q9NP77 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSU72Q9NP77 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSU72Q9NP77 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SSU72Q9NP77 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SSU72Q9NP77 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.19■□□□□ 0.66
SSU72Q9NP77 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.18■□□□□ 0.66
SSU72Q9NP77 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSU72Q9NP77 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSU72Q9NP77 PCDHB18P-201ENST00000524813 2368 ntBASIC19.18■□□□□ 0.66
SSU72Q9NP77 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSU72Q9NP77 ANO7L1-203ENST00000602586 1720 ntBASIC19.18■□□□□ 0.66
SSU72Q9NP77 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.18■□□□□ 0.66
SSU72Q9NP77 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SSU72Q9NP77 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSU72Q9NP77 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SSU72Q9NP77 CYP2T1P-201ENST00000432607 1285 ntBASIC19.18■□□□□ 0.66
SSU72Q9NP77 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.18■□□□□ 0.66
SSU72Q9NP77 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.18■□□□□ 0.66
SSU72Q9NP77 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.18■□□□□ 0.66
SSU72Q9NP77 AC083906.6-201ENST00000641366 219 ntBASIC19.18■□□□□ 0.66
SSU72Q9NP77 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSU72Q9NP77 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSU72Q9NP77 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SSU72Q9NP77 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SSU72Q9NP77 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.18■□□□□ 0.66
SSU72Q9NP77 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SSU72Q9NP77 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSU72Q9NP77 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSU72Q9NP77 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SSU72Q9NP77 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSU72Q9NP77 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SSU72Q9NP77 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SSU72Q9NP77 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.17■□□□□ 0.66
SSU72Q9NP77 AC010980.2-201ENST00000587099 1412 ntBASIC19.17■□□□□ 0.66
SSU72Q9NP77 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSU72Q9NP77 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSU72Q9NP77 AL133373.2-201ENST00000623187 2828 ntBASIC19.17■□□□□ 0.66
SSU72Q9NP77 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SSU72Q9NP77 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SSU72Q9NP77 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSU72Q9NP77 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSU72Q9NP77 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSU72Q9NP77 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.17■□□□□ 0.66
SSU72Q9NP77 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.17■□□□□ 0.66
SSU72Q9NP77 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SSU72Q9NP77 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.17■□□□□ 0.66
SSU72Q9NP77 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.17■□□□□ 0.66
SSU72Q9NP77 NTF6G-201ENST00000591094 616 ntBASIC19.17■□□□□ 0.66
SSU72Q9NP77 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.17■□□□□ 0.66
SSU72Q9NP77 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SSU72Q9NP77 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.17■□□□□ 0.66
SSU72Q9NP77 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.17■□□□□ 0.66
SSU72Q9NP77 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSU72Q9NP77 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SSU72Q9NP77 AC068880.1-201ENST00000507289 2297 ntBASIC19.17■□□□□ 0.66
SSU72Q9NP77 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSU72Q9NP77 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.17■□□□□ 0.66
SSU72Q9NP77 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSU72Q9NP77 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SSU72Q9NP77 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SSU72Q9NP77 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSU72Q9NP77 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms