Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.37■■□□□ 1.01
RNF39Q9H2S5 REXO1L10P-201ENST00000615707 1290 ntBASIC21.37■■□□□ 1.01
RNF39Q9H2S5 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.37■■□□□ 1.01
RNF39Q9H2S5 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF39Q9H2S5 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.37■■□□□ 1.01
RNF39Q9H2S5 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.37■■□□□ 1.01
RNF39Q9H2S5 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF39Q9H2S5 AL391422.3-201ENST00000603791 2761 ntBASIC21.37■■□□□ 1.01
RNF39Q9H2S5 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF39Q9H2S5 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF39Q9H2S5 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF39Q9H2S5 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.37■■□□□ 1.01
RNF39Q9H2S5 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RNF39Q9H2S5 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
RNF39Q9H2S5 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 AC092667.1-201ENST00000434301 2586 ntBASIC21.36■■□□□ 1.01
RNF39Q9H2S5 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 PPIL3-202ENST00000392283 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 ZNF92P1Y-201ENST00000415010 1191 ntBASIC21.36■■□□□ 1.01
RNF39Q9H2S5 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 KSR1P1-201ENST00000446298 240 ntBASIC21.36■■□□□ 1.01
RNF39Q9H2S5 NUDT16P1-203ENST00000513809 620 ntBASIC21.36■■□□□ 1.01
RNF39Q9H2S5 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 GOLGA6L3-201ENST00000507199 1679 ntBASIC21.36■■□□□ 1.01
RNF39Q9H2S5 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 FEM1AP1-201ENST00000431297 1995 ntBASIC21.36■■□□□ 1.01
RNF39Q9H2S5 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF39Q9H2S5 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 KRT18P16-201ENST00000510337 1294 ntBASIC21.35■■□□□ 1.01
RNF39Q9H2S5 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 C1QL1P1-201ENST00000568105 661 ntBASIC21.35■■□□□ 1.01
RNF39Q9H2S5 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 AC133561.5-201ENST00000635547 218 ntBASIC21.35■■□□□ 1.01
RNF39Q9H2S5 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF39Q9H2S5 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNF39Q9H2S5 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF39Q9H2S5 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.34■■□□□ 1.01
RNF39Q9H2S5 C9orf85-203ENST00000377031 1107 ntTSL 3 BASIC21.34■■□□□ 1.01
RNF39Q9H2S5 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.34■■□□□ 1.01
RNF39Q9H2S5 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.34■■□□□ 1.01
RNF39Q9H2S5 SFR1P2-201ENST00000421841 730 ntBASIC21.34■■□□□ 1.01
RNF39Q9H2S5 YBX1P10-201ENST00000444752 975 ntBASIC21.34■■□□□ 1.01
RNF39Q9H2S5 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.34■■□□□ 1.01
RNF39Q9H2S5 RBM17P1-201ENST00000453646 1190 ntBASIC21.34■■□□□ 1.01
RNF39Q9H2S5 AC137794.1-201ENST00000509185 914 ntTSL 5 BASIC21.34■■□□□ 1.01
RNF39Q9H2S5 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.34■■□□□ 1.01
RNF39Q9H2S5 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNF39Q9H2S5 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.34■■□□□ 1.01
RNF39Q9H2S5 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF39Q9H2S5 AC079598.2-202ENST00000546624 1451 ntBASIC21.33■■□□□ 1.01
RNF39Q9H2S5 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF39Q9H2S5 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF39Q9H2S5 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.33■■□□□ 1.01
RNF39Q9H2S5 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF39Q9H2S5 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC21.33■■□□□ 1.01
RNF39Q9H2S5 AC090152.1-202ENST00000518993 1079 ntTSL 3 BASIC21.33■■□□□ 1.01
RNF39Q9H2S5 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.33■■□□□ 1.01
RNF39Q9H2S5 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC21.33■■□□□ 1.01
RNF39Q9H2S5 AC018362.2-202ENST00000567089 562 ntTSL 3 BASIC21.33■■□□□ 1.01
RNF39Q9H2S5 LINC01023-201ENST00000606054 436 ntBASIC21.33■■□□□ 1.01
RNF39Q9H2S5 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.33■■□□□ 1.01
RNF39Q9H2S5 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.33■■□□□ 1.01
RNF39Q9H2S5 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RNF39Q9H2S5 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.33■■□□□ 1
RNF39Q9H2S5 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.33■■□□□ 1
RNF39Q9H2S5 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.33■■□□□ 1
RNF39Q9H2S5 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.32■■□□□ 1
RNF39Q9H2S5 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
RNF39Q9H2S5 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RNF39Q9H2S5 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.32■■□□□ 1
RNF39Q9H2S5 NIFK-AS1-202ENST00000414554 1411 ntTSL 2 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms