Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDCA3Q99618 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDCA3Q99618 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDCA3Q99618 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDCA3Q99618 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.16■□□□□ 0.82
CDCA3Q99618 AC004870.1-201ENST00000315132 882 ntBASIC20.16■□□□□ 0.82
CDCA3Q99618 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.16■□□□□ 0.82
CDCA3Q99618 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDCA3Q99618 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.16■□□□□ 0.82
CDCA3Q99618 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
CDCA3Q99618 RN7SL510P-201ENST00000581311 263 ntBASIC20.16■□□□□ 0.82
CDCA3Q99618 MIR4674-201ENST00000582457 87 ntBASIC20.16■□□□□ 0.82
CDCA3Q99618 AL121672.3-201ENST00000608644 468 ntBASIC20.16■□□□□ 0.82
CDCA3Q99618 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDCA3Q99618 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDCA3Q99618 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.16■□□□□ 0.82
CDCA3Q99618 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDCA3Q99618 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDCA3Q99618 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDCA3Q99618 AC012676.1-201ENST00000574705 1949 ntBASIC20.15■□□□□ 0.82
CDCA3Q99618 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDCA3Q99618 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDCA3Q99618 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CDCA3Q99618 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDCA3Q99618 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDCA3Q99618 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDCA3Q99618 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.15■□□□□ 0.82
CDCA3Q99618 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.15■□□□□ 0.82
CDCA3Q99618 FAAHP1-202ENST00000446499 1238 ntBASIC20.15■□□□□ 0.82
CDCA3Q99618 TSSC2-201ENST00000450217 709 ntBASIC20.15■□□□□ 0.82
CDCA3Q99618 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDCA3Q99618 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CDCA3Q99618 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.15■□□□□ 0.82
CDCA3Q99618 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDCA3Q99618 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDCA3Q99618 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDCA3Q99618 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
CDCA3Q99618 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDCA3Q99618 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CDCA3Q99618 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.82
CDCA3Q99618 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.14■□□□□ 0.82
CDCA3Q99618 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
CDCA3Q99618 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CDCA3Q99618 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.14■□□□□ 0.81
CDCA3Q99618 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CDCA3Q99618 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.14■□□□□ 0.81
CDCA3Q99618 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDCA3Q99618 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDCA3Q99618 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDCA3Q99618 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDCA3Q99618 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDCA3Q99618 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.14■□□□□ 0.81
CDCA3Q99618 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.14■□□□□ 0.81
CDCA3Q99618 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.14■□□□□ 0.81
CDCA3Q99618 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.14■□□□□ 0.81
CDCA3Q99618 BX276092.5-203ENST00000456199 560 ntBASIC20.14■□□□□ 0.81
CDCA3Q99618 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC20.14■□□□□ 0.81
CDCA3Q99618 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.14■□□□□ 0.81
CDCA3Q99618 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDCA3Q99618 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.14■□□□□ 0.81
CDCA3Q99618 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDCA3Q99618 KLK8-205ENST00000593490 267 ntTSL 3 BASIC20.14■□□□□ 0.81
CDCA3Q99618 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.14■□□□□ 0.81
CDCA3Q99618 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDCA3Q99618 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDCA3Q99618 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDCA3Q99618 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
CDCA3Q99618 AC009237.14-201ENST00000609975 1594 ntBASIC20.13■□□□□ 0.81
CDCA3Q99618 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDCA3Q99618 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CDCA3Q99618 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDCA3Q99618 AC246785.2-201ENST00000432512 513 ntBASIC20.13■□□□□ 0.81
CDCA3Q99618 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.13■□□□□ 0.81
CDCA3Q99618 AC011498.5-201ENST00000592027 486 ntBASIC20.13■□□□□ 0.81
CDCA3Q99618 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDCA3Q99618 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.13■□□□□ 0.81
CDCA3Q99618 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDCA3Q99618 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDCA3Q99618 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDCA3Q99618 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.13■□□□□ 0.81
CDCA3Q99618 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.13■□□□□ 0.81
CDCA3Q99618 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDCA3Q99618 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDCA3Q99618 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.13■□□□□ 0.81
CDCA3Q99618 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDCA3Q99618 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDCA3Q99618 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.12■□□□□ 0.81
CDCA3Q99618 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDCA3Q99618 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.12■□□□□ 0.81
CDCA3Q99618 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDCA3Q99618 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDCA3Q99618 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDCA3Q99618 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CDCA3Q99618 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.12■□□□□ 0.81
CDCA3Q99618 FDX1P1-201ENST00000449115 551 ntBASIC20.12■□□□□ 0.81
CDCA3Q99618 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.12■□□□□ 0.81
CDCA3Q99618 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.12■□□□□ 0.81
CDCA3Q99618 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.12■□□□□ 0.81
CDCA3Q99618 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.12■□□□□ 0.81
CDCA3Q99618 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms