Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS39Q96JC1 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS39Q96JC1 AC020763.4-201ENST00000623414 4170 ntBASIC19.38■□□□□ 0.69
VPS39Q96JC1 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS39Q96JC1 TEX21P-204ENST00000641479 1693 ntBASIC19.38■□□□□ 0.69
VPS39Q96JC1 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
VPS39Q96JC1 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS39Q96JC1 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS39Q96JC1 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS39Q96JC1 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
VPS39Q96JC1 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
VPS39Q96JC1 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS39Q96JC1 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS39Q96JC1 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS39Q96JC1 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS39Q96JC1 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS39Q96JC1 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS39Q96JC1 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS39Q96JC1 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS39Q96JC1 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.37■□□□□ 0.69
VPS39Q96JC1 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.37■□□□□ 0.69
VPS39Q96JC1 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.37■□□□□ 0.69
VPS39Q96JC1 MYC-209ENST00000641252 345 ntBASIC19.37■□□□□ 0.69
VPS39Q96JC1 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS39Q96JC1 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS39Q96JC1 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS39Q96JC1 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
VPS39Q96JC1 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS39Q96JC1 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS39Q96JC1 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS39Q96JC1 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
VPS39Q96JC1 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS39Q96JC1 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS39Q96JC1 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS39Q96JC1 AC090340.1-201ENST00000620778 4980 ntBASIC19.36■□□□□ 0.69
VPS39Q96JC1 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
VPS39Q96JC1 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
VPS39Q96JC1 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
VPS39Q96JC1 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
VPS39Q96JC1 AC092368.3-202ENST00000574180 1591 ntBASIC19.36■□□□□ 0.69
VPS39Q96JC1 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS39Q96JC1 AL161938.1-201ENST00000569833 2180 ntBASIC19.36■□□□□ 0.69
VPS39Q96JC1 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS39Q96JC1 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS39Q96JC1 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS39Q96JC1 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS39Q96JC1 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS39Q96JC1 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS39Q96JC1 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.36■□□□□ 0.69
VPS39Q96JC1 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS39Q96JC1 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.36■□□□□ 0.69
VPS39Q96JC1 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS39Q96JC1 HLA-B-256ENST00000639848 1089 ntBASIC19.36■□□□□ 0.69
VPS39Q96JC1 AC141586.3-201ENST00000562166 1838 ntBASIC19.36■□□□□ 0.69
VPS39Q96JC1 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS39Q96JC1 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.36■□□□□ 0.69
VPS39Q96JC1 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS39Q96JC1 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS39Q96JC1 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS39Q96JC1 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS39Q96JC1 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS39Q96JC1 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS39Q96JC1 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
VPS39Q96JC1 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS39Q96JC1 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS39Q96JC1 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS39Q96JC1 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS39Q96JC1 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS39Q96JC1 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VPS39Q96JC1 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.35■□□□□ 0.69
VPS39Q96JC1 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS39Q96JC1 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.35■□□□□ 0.69
VPS39Q96JC1 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS39Q96JC1 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
VPS39Q96JC1 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS39Q96JC1 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS39Q96JC1 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
VPS39Q96JC1 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS39Q96JC1 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS39Q96JC1 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS39Q96JC1 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.35■□□□□ 0.69
VPS39Q96JC1 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS39Q96JC1 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
VPS39Q96JC1 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS39Q96JC1 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS39Q96JC1 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS39Q96JC1 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS39Q96JC1 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS39Q96JC1 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS39Q96JC1 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS39Q96JC1 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS39Q96JC1 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
VPS39Q96JC1 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS39Q96JC1 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.34■□□□□ 0.69
VPS39Q96JC1 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS39Q96JC1 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS39Q96JC1 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS39Q96JC1 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS39Q96JC1 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS39Q96JC1 AL121906.2-201ENST00000621597 723 ntBASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms