Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC4Q92889 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC4Q92889 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.91■■□□□ 1.1
ERCC4Q92889 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC4Q92889 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC4Q92889 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.91■■□□□ 1.1
ERCC4Q92889 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.91■■□□□ 1.1
ERCC4Q92889 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC4Q92889 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.9■■□□□ 1.1
ERCC4Q92889 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC4Q92889 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC4Q92889 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC4Q92889 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC21.9■■□□□ 1.1
ERCC4Q92889 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC4Q92889 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
ERCC4Q92889 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.9■■□□□ 1.1
ERCC4Q92889 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.9■■□□□ 1.1
ERCC4Q92889 AC026185.1-201ENST00000445748 174 ntBASIC21.9■■□□□ 1.1
ERCC4Q92889 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.9■■□□□ 1.1
ERCC4Q92889 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.9■■□□□ 1.1
ERCC4Q92889 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.9■■□□□ 1.1
ERCC4Q92889 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.9■■□□□ 1.1
ERCC4Q92889 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.9■■□□□ 1.1
ERCC4Q92889 AL137784.2-201ENST00000607332 1000 ntBASIC21.9■■□□□ 1.1
ERCC4Q92889 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC21.9■■□□□ 1.1
ERCC4Q92889 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.9■■□□□ 1.1
ERCC4Q92889 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC4Q92889 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC4Q92889 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC4Q92889 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.9■■□□□ 1.1
ERCC4Q92889 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
ERCC4Q92889 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
ERCC4Q92889 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC4Q92889 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC4Q92889 CROCCP3-202ENST00000420820 1947 ntBASIC21.9■■□□□ 1.1
ERCC4Q92889 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC4Q92889 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC4Q92889 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC4Q92889 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC21.9■■□□□ 1.1
ERCC4Q92889 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
ERCC4Q92889 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.89■■□□□ 1.1
ERCC4Q92889 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
ERCC4Q92889 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
ERCC4Q92889 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.89■■□□□ 1.1
ERCC4Q92889 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
ERCC4Q92889 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
ERCC4Q92889 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
ERCC4Q92889 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
ERCC4Q92889 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.89■■□□□ 1.1
ERCC4Q92889 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
ERCC4Q92889 MIPEPP3-201ENST00000412105 444 ntBASIC21.89■■□□□ 1.09
ERCC4Q92889 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.89■■□□□ 1.09
ERCC4Q92889 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
ERCC4Q92889 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ERCC4Q92889 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ERCC4Q92889 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
ERCC4Q92889 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ERCC4Q92889 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
ERCC4Q92889 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.88■■□□□ 1.09
ERCC4Q92889 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.88■■□□□ 1.09
ERCC4Q92889 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
ERCC4Q92889 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
ERCC4Q92889 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
ERCC4Q92889 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.88■■□□□ 1.09
ERCC4Q92889 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ERCC4Q92889 DUSP5P2-201ENST00000426873 1033 ntBASIC21.88■■□□□ 1.09
ERCC4Q92889 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.88■■□□□ 1.09
ERCC4Q92889 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.88■■□□□ 1.09
ERCC4Q92889 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.88■■□□□ 1.09
ERCC4Q92889 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
ERCC4Q92889 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
ERCC4Q92889 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.88■■□□□ 1.09
ERCC4Q92889 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC21.88■■□□□ 1.09
ERCC4Q92889 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
ERCC4Q92889 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
ERCC4Q92889 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.88■■□□□ 1.09
ERCC4Q92889 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
ERCC4Q92889 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
ERCC4Q92889 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.88■■□□□ 1.09
ERCC4Q92889 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ERCC4Q92889 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ERCC4Q92889 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC21.88■■□□□ 1.09
ERCC4Q92889 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.88■■□□□ 1.09
ERCC4Q92889 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
ERCC4Q92889 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
ERCC4Q92889 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ERCC4Q92889 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
ERCC4Q92889 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
ERCC4Q92889 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.87■■□□□ 1.09
ERCC4Q92889 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.87■■□□□ 1.09
ERCC4Q92889 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.87■■□□□ 1.09
ERCC4Q92889 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.87■■□□□ 1.09
ERCC4Q92889 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
ERCC4Q92889 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ERCC4Q92889 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
ERCC4Q92889 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ERCC4Q92889 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ERCC4Q92889 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC21.87■■□□□ 1.09
ERCC4Q92889 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.87■■□□□ 1.09
ERCC4Q92889 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms