Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RTF1Q92541 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC25.26■■□□□ 1.63
RTF1Q92541 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RTF1Q92541 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC25.26■■□□□ 1.63
RTF1Q92541 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RTF1Q92541 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC25.25■■□□□ 1.63
RTF1Q92541 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RTF1Q92541 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RTF1Q92541 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RTF1Q92541 TMPOP1-202ENST00000424642 1267 ntBASIC25.25■■□□□ 1.63
RTF1Q92541 SLC25A3P1-201ENST00000443844 931 ntBASIC25.25■■□□□ 1.63
RTF1Q92541 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC25.25■■□□□ 1.63
RTF1Q92541 AC128688.1-201ENST00000487626 519 ntBASIC25.25■■□□□ 1.63
RTF1Q92541 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RTF1Q92541 RN7SL850P-201ENST00000579959 291 ntBASIC25.25■■□□□ 1.63
RTF1Q92541 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RTF1Q92541 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC25.25■■□□□ 1.63
RTF1Q92541 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RTF1Q92541 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RTF1Q92541 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RTF1Q92541 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
RTF1Q92541 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC25.25■■□□□ 1.63
RTF1Q92541 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RTF1Q92541 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RTF1Q92541 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC25.24■■□□□ 1.63
RTF1Q92541 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
RTF1Q92541 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC25.24■■□□□ 1.63
RTF1Q92541 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC25.24■■□□□ 1.63
RTF1Q92541 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC25.24■■□□□ 1.63
RTF1Q92541 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
RTF1Q92541 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RTF1Q92541 AIRN-201ENST00000601203 4374 ntBASIC25.24■■□□□ 1.63
RTF1Q92541 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
RTF1Q92541 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
RTF1Q92541 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RTF1Q92541 HIST1H2APS4-201ENST00000362070 348 ntBASIC25.24■■□□□ 1.63
RTF1Q92541 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC25.24■■□□□ 1.63
RTF1Q92541 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC25.24■■□□□ 1.63
RTF1Q92541 AC092865.7-201ENST00000641832 219 ntBASIC25.24■■□□□ 1.63
RTF1Q92541 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
RTF1Q92541 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
RTF1Q92541 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
RTF1Q92541 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
RTF1Q92541 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC25.24■■□□□ 1.63
RTF1Q92541 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RTF1Q92541 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC25.23■■□□□ 1.63
RTF1Q92541 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC25.23■■□□□ 1.63
RTF1Q92541 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RTF1Q92541 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC25.23■■□□□ 1.63
RTF1Q92541 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC25.23■■□□□ 1.63
RTF1Q92541 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RTF1Q92541 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RTF1Q92541 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
RTF1Q92541 AL137013.1-201ENST00000432946 1228 ntBASIC25.23■■□□□ 1.63
RTF1Q92541 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC25.23■■□□□ 1.63
RTF1Q92541 ECEL1P2-202ENST00000465689 757 ntBASIC25.23■■□□□ 1.63
RTF1Q92541 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC25.23■■□□□ 1.63
RTF1Q92541 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC25.23■■□□□ 1.63
RTF1Q92541 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC25.23■■□□□ 1.63
RTF1Q92541 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RTF1Q92541 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RTF1Q92541 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC25.23■■□□□ 1.63
RTF1Q92541 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RTF1Q92541 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RTF1Q92541 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
RTF1Q92541 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC25.22■■□□□ 1.63
RTF1Q92541 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
RTF1Q92541 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
RTF1Q92541 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC25.22■■□□□ 1.63
RTF1Q92541 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC25.22■■□□□ 1.63
RTF1Q92541 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC25.22■■□□□ 1.63
RTF1Q92541 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC25.22■■□□□ 1.63
RTF1Q92541 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC25.22■■□□□ 1.63
RTF1Q92541 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC25.22■■□□□ 1.63
RTF1Q92541 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC25.22■■□□□ 1.63
RTF1Q92541 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTF1Q92541 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTF1Q92541 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTF1Q92541 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTF1Q92541 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC25.22■■□□□ 1.63
RTF1Q92541 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTF1Q92541 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
RTF1Q92541 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
RTF1Q92541 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC25.21■■□□□ 1.63
RTF1Q92541 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
RTF1Q92541 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
RTF1Q92541 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
RTF1Q92541 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
RTF1Q92541 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
RTF1Q92541 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC25.21■■□□□ 1.63
RTF1Q92541 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC25.21■■□□□ 1.63
RTF1Q92541 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC25.21■■□□□ 1.63
RTF1Q92541 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC25.21■■□□□ 1.63
RTF1Q92541 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC25.21■■□□□ 1.63
RTF1Q92541 AC010331.1-201ENST00000611423 582 ntBASIC25.21■■□□□ 1.63
RTF1Q92541 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC25.21■■□□□ 1.63
RTF1Q92541 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC25.21■■□□□ 1.63
RTF1Q92541 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
RTF1Q92541 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC25.21■■□□□ 1.63
RTF1Q92541 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC25.21■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms