Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
KRT40Q6A162 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
KRT40Q6A162 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
KRT40Q6A162 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC22.41■■□□□ 1.18
KRT40Q6A162 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
KRT40Q6A162 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
KRT40Q6A162 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC22.4■■□□□ 1.18
KRT40Q6A162 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC22.4■■□□□ 1.18
KRT40Q6A162 TSPY7P-201ENST00000431358 1114 ntBASIC22.4■■□□□ 1.18
KRT40Q6A162 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC22.4■■□□□ 1.18
KRT40Q6A162 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC22.4■■□□□ 1.18
KRT40Q6A162 REXO2-216ENST00000544196 452 ntTSL 3 BASIC22.4■■□□□ 1.18
KRT40Q6A162 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
KRT40Q6A162 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC22.4■■□□□ 1.18
KRT40Q6A162 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC22.4■■□□□ 1.18
KRT40Q6A162 AC104417.2-201ENST00000562989 1793 ntBASIC22.4■■□□□ 1.18
KRT40Q6A162 NBPF21P-201ENST00000425093 1451 ntBASIC22.4■■□□□ 1.18
KRT40Q6A162 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
KRT40Q6A162 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT40Q6A162 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
KRT40Q6A162 ANKRD18DP-204ENST00000455355 1975 ntBASIC22.39■■□□□ 1.18
KRT40Q6A162 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.18
KRT40Q6A162 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
KRT40Q6A162 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.18
KRT40Q6A162 AC087289.5-201ENST00000586076 3175 ntBASIC22.39■■□□□ 1.18
KRT40Q6A162 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.18
KRT40Q6A162 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
KRT40Q6A162 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC22.39■■□□□ 1.17
KRT40Q6A162 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC22.39■■□□□ 1.17
KRT40Q6A162 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
KRT40Q6A162 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.17
KRT40Q6A162 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC22.39■■□□□ 1.17
KRT40Q6A162 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC22.39■■□□□ 1.17
KRT40Q6A162 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
KRT40Q6A162 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
KRT40Q6A162 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
KRT40Q6A162 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
KRT40Q6A162 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC22.39■■□□□ 1.17
KRT40Q6A162 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
KRT40Q6A162 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
KRT40Q6A162 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
KRT40Q6A162 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC22.39■■□□□ 1.17
KRT40Q6A162 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC22.38■■□□□ 1.17
KRT40Q6A162 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
KRT40Q6A162 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
KRT40Q6A162 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC22.38■■□□□ 1.17
KRT40Q6A162 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
KRT40Q6A162 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
KRT40Q6A162 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
KRT40Q6A162 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
KRT40Q6A162 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
KRT40Q6A162 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC22.38■■□□□ 1.17
KRT40Q6A162 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC22.38■■□□□ 1.17
KRT40Q6A162 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC22.38■■□□□ 1.17
KRT40Q6A162 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
KRT40Q6A162 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC22.38■■□□□ 1.17
KRT40Q6A162 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC22.38■■□□□ 1.17
KRT40Q6A162 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC22.38■■□□□ 1.17
KRT40Q6A162 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
KRT40Q6A162 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
KRT40Q6A162 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC22.38■■□□□ 1.17
KRT40Q6A162 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC22.37■■□□□ 1.17
KRT40Q6A162 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 SDHAP1-207ENST00000440850 2000 ntBASIC22.37■■□□□ 1.17
KRT40Q6A162 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 TSPY15P-201ENST00000457163 923 ntBASIC22.37■■□□□ 1.17
KRT40Q6A162 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC22.37■■□□□ 1.17
KRT40Q6A162 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC22.37■■□□□ 1.17
KRT40Q6A162 AL023875.1-201ENST00000640777 796 ntBASIC22.37■■□□□ 1.17
KRT40Q6A162 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC22.37■■□□□ 1.17
KRT40Q6A162 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC22.37■■□□□ 1.17
KRT40Q6A162 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms