Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 SNHG9-202ENST00000564014 471 ntBASIC10.64□□□□□ -0.71
UBR4Q5T4S7 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 AC093525.10-201ENST00000625130 1569 ntBASIC10.63□□□□□ -0.71
UBR4Q5T4S7 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 MED17-227ENST00000640521 2047 ntTSL 5 BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 Z83851.2-201ENST00000609564 659 ntBASIC10.63□□□□□ -0.71
UBR4Q5T4S7 AC093028.1-201ENST00000622998 982 ntBASIC10.63□□□□□ -0.71
UBR4Q5T4S7 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC10.63□□□□□ -0.71
UBR4Q5T4S7 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 AL591424.1-201ENST00000442569 1213 ntBASIC10.62□□□□□ -0.71
UBR4Q5T4S7 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 HLA-A-209ENST00000638375 975 ntBASIC10.62□□□□□ -0.71
UBR4Q5T4S7 AC068587.10-201ENST00000641210 219 ntBASIC10.62□□□□□ -0.71
UBR4Q5T4S7 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 PTPA-216ENST00000432651 857 ntTSL 2 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 AC074051.2-201ENST00000565115 352 ntBASIC10.62□□□□□ -0.71
UBR4Q5T4S7 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC10.62□□□□□ -0.71
UBR4Q5T4S7 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 KIRREL3-AS3-201ENST00000404882 831 ntBASIC10.61□□□□□ -0.71
UBR4Q5T4S7 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 AC139530.1-201ENST00000575312 1977 ntBASIC10.61□□□□□ -0.71
UBR4Q5T4S7 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
UBR4Q5T4S7 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms