Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
USP39Q53GS9 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP39Q53GS9 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP39Q53GS9 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP39Q53GS9 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.66■□□□□ 0.74
USP39Q53GS9 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
USP39Q53GS9 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP39Q53GS9 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP39Q53GS9 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
USP39Q53GS9 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.65■□□□□ 0.74
USP39Q53GS9 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USP39Q53GS9 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
USP39Q53GS9 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP39Q53GS9 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.65■□□□□ 0.74
USP39Q53GS9 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.65■□□□□ 0.74
USP39Q53GS9 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.65■□□□□ 0.74
USP39Q53GS9 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
USP39Q53GS9 UPK3BP1-201ENST00000428678 509 ntBASIC19.65■□□□□ 0.74
USP39Q53GS9 CCR12P-201ENST00000446203 998 ntBASIC19.65■□□□□ 0.74
USP39Q53GS9 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.65■□□□□ 0.74
USP39Q53GS9 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.65■□□□□ 0.74
USP39Q53GS9 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.65■□□□□ 0.74
USP39Q53GS9 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.65■□□□□ 0.74
USP39Q53GS9 AC011298.2-201ENST00000617989 482 ntBASIC19.65■□□□□ 0.74
USP39Q53GS9 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.65■□□□□ 0.74
USP39Q53GS9 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
USP39Q53GS9 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP39Q53GS9 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.65■□□□□ 0.74
USP39Q53GS9 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP39Q53GS9 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP39Q53GS9 AL391422.3-201ENST00000603791 2761 ntBASIC19.65■□□□□ 0.74
USP39Q53GS9 DPP3P2-201ENST00000416030 1696 ntBASIC19.65■□□□□ 0.74
USP39Q53GS9 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
USP39Q53GS9 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
USP39Q53GS9 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.65■□□□□ 0.74
USP39Q53GS9 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
USP39Q53GS9 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.64■□□□□ 0.74
USP39Q53GS9 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.64■□□□□ 0.74
USP39Q53GS9 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USP39Q53GS9 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USP39Q53GS9 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USP39Q53GS9 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP39Q53GS9 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP39Q53GS9 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.64■□□□□ 0.73
USP39Q53GS9 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
USP39Q53GS9 INGX-201ENST00000359239 846 ntBASIC19.64■□□□□ 0.73
USP39Q53GS9 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.64■□□□□ 0.73
USP39Q53GS9 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.64■□□□□ 0.73
USP39Q53GS9 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.64■□□□□ 0.73
USP39Q53GS9 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
USP39Q53GS9 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP39Q53GS9 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP39Q53GS9 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.64■□□□□ 0.73
USP39Q53GS9 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
USP39Q53GS9 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.64■□□□□ 0.73
USP39Q53GS9 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP39Q53GS9 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP39Q53GS9 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP39Q53GS9 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
USP39Q53GS9 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP39Q53GS9 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP39Q53GS9 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP39Q53GS9 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.63■□□□□ 0.73
USP39Q53GS9 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.63■□□□□ 0.73
USP39Q53GS9 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP39Q53GS9 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
USP39Q53GS9 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.63■□□□□ 0.73
USP39Q53GS9 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP39Q53GS9 RCC2P6-201ENST00000526625 1557 ntBASIC19.63■□□□□ 0.73
USP39Q53GS9 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.63■□□□□ 0.73
USP39Q53GS9 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP39Q53GS9 AC004951.3-201ENST00000418645 1148 ntBASIC19.63■□□□□ 0.73
USP39Q53GS9 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.63■□□□□ 0.73
USP39Q53GS9 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP39Q53GS9 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
USP39Q53GS9 AL358472.4-201ENST00000633140 710 ntBASIC19.63■□□□□ 0.73
USP39Q53GS9 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP39Q53GS9 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
USP39Q53GS9 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP39Q53GS9 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP39Q53GS9 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP39Q53GS9 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP39Q53GS9 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP39Q53GS9 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
USP39Q53GS9 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
USP39Q53GS9 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP39Q53GS9 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.62■□□□□ 0.73
USP39Q53GS9 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP39Q53GS9 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP39Q53GS9 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP39Q53GS9 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP39Q53GS9 RNF152P1-201ENST00000397754 604 ntBASIC19.62■□□□□ 0.73
USP39Q53GS9 AC117947.1-201ENST00000427448 529 ntBASIC19.62■□□□□ 0.73
USP39Q53GS9 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.62■□□□□ 0.73
USP39Q53GS9 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.62■□□□□ 0.73
USP39Q53GS9 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.62■□□□□ 0.73
USP39Q53GS9 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.62■□□□□ 0.73
USP39Q53GS9 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP39Q53GS9 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.62■□□□□ 0.73
USP39Q53GS9 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms